Adult muscle.

Description

This samples serie was produced as part of the RoadMap Project.

Source

Files downloaded from GEO FTP server: ftp://ftp.ncbi.nlm.nih.gov/pub/geo/DATA/roadmapepigenomics/by_sample/
Input file format: BED

Samples

From Human Feb. 2009 (GRCh37/hg19) Assembly.

ChIP-seq data:

Filename Description Feature GEO-ID
1 GSM621740_BI.Muscle_Satellite_Cultured_Cells.H3K27me3.hSKM-1.sga Muscle Satellite Cultured Cells|H3K27me3|rep 1 H3K27me3 GSM621740
2 GSM621751_BI.Muscle_Satellite_Cultured_Cells.H3K27me3.hSKM-2.sga Muscle Satellite Cultured Cells|H3K27me3|rep 2 H3K27me3 GSM621751
3 GSM621755_BI.Muscle_Satellite_Cultured_Cells.H3K27me3.hSKM-3.sga Muscle Satellite Cultured Cells|H3K27me3|rep 3 H3K27me3 GSM621755
4 GSM621739_BI.Muscle_Satellite_Cultured_Cells.H3K36me3.hSKM-1.sga Muscle Satellite Cultured Cells|H3K36me3|rep 1 H3K36me3 GSM621739
5 GSM621749_BI.Muscle_Satellite_Cultured_Cells.H3K36me3.hSKM-2.sga Muscle Satellite Cultured Cells|H3K36me3|rep 2 H3K36me3 GSM621749
6 GSM621754_BI.Muscle_Satellite_Cultured_Cells.H3K36me3.hSKM-3.sga Muscle Satellite Cultured Cells|H3K36me3|rep 3 H3K36me3 GSM621754
7 GSM621741_BI.Muscle_Satellite_Cultured_Cells.H3K4me1.hSKM-1.sga Muscle Satellite Cultured Cells|H3K4me1|rep 1 H3K4me1 GSM621741
8 GSM621752_BI.Muscle_Satellite_Cultured_Cells.H3K4me1.hSKM-2.sga Muscle Satellite Cultured Cells|H3K4me1|rep 2 H3K4me1 GSM621752
9 GSM621759_BI.Muscle_Satellite_Cultured_Cells.H3K4me1.hSKM-3.sga Muscle Satellite Cultured Cells|H3K4me1|rep 3 H3K4me1 GSM621759
10 GSM621742_BI.Muscle_Satellite_Cultured_Cells.H3K4me2.hSKM-1.sga Muscle Satellite Cultured Cells|H3K4me2|rep 1 H3K4me2 GSM621742
11 GSM621750_BI.Muscle_Satellite_Cultured_Cells.H3K4me2.hSKM-2.sga Muscle Satellite Cultured Cells|H3K4me2|rep 2 H3K4me2 GSM621750
12 GSM621758_BI.Muscle_Satellite_Cultured_Cells.H3K4me2.hSKM-3.sga Muscle Satellite Cultured Cells|H3K4me2|rep 3 H3K4me2 GSM621758
13 GSM621737_BI.Muscle_Satellite_Cultured_Cells.H3K4me3.hSKM-1.sga Muscle Satellite Cultured Cells|H3K4me3|rep 1 H3K4me3 GSM621737
14 GSM621745_BI.Muscle_Satellite_Cultured_Cells.H3K4me3.hSKM-2.sga Muscle Satellite Cultured Cells|H3K4me3|rep 2 H3K4me3 GSM621745
15 GSM621760_BI.Muscle_Satellite_Cultured_Cells.H3K4me3.hSKM-3.sga Muscle Satellite Cultured Cells|H3K4me3|rep 3 H3K4me3 GSM621760
16 GSM621738_BI.Muscle_Satellite_Cultured_Cells.H3K9ac.hSKM-1.sga Muscle Satellite Cultured Cells|H3K9ac|rep 1 H3K9ac GSM621738
17 GSM621748_BI.Muscle_Satellite_Cultured_Cells.H3K9ac.hSKM-2.sga Muscle Satellite Cultured Cells|H3K9ac|rep 2 H3K9ac GSM621748
18 GSM621757_BI.Muscle_Satellite_Cultured_Cells.H3K9ac.hSKM-3.sga Muscle Satellite Cultured Cells|H3K9ac|rep 3 H3K9ac GSM621757
19 GSM621744_BI.Muscle_Satellite_Cultured_Cells.H3K9me3.hSKM-1.sga Muscle Satellite Cultured Cells|H3K9me3|rep 1 H3K9me3 GSM621744
20 GSM621747_BI.Muscle_Satellite_Cultured_Cells.H3K9me3.hSKM-2.sga Muscle Satellite Cultured Cells|H3K9me3|rep 2 H3K9me3 GSM621747
21 GSM621753_BI.Muscle_Satellite_Cultured_Cells.H3K9me3.hSKM-3.sga Muscle Satellite Cultured Cells|H3K9me3|rep 3 H3K9me3 GSM621753
22 GSM621743_BI.Muscle_Satellite_Cultured_Cells.Input.hSKM-1.sga Muscle Satellite Cultured Cells|Input|rep 1 Input GSM621743
23 GSM621746_BI.Muscle_Satellite_Cultured_Cells.Input.hSKM-2.sga Muscle Satellite Cultured Cells|Input|rep 2 Input GSM621746
24 GSM621756_BI.Muscle_Satellite_Cultured_Cells.Input.hSKM-3.sga Muscle Satellite Cultured Cells|Input|rep 3 Input GSM621756
25 GSM1013130_UCSD.Psoas_Muscle.H3K27ac.STL002.sga Psoas Muscle|H3K27ac|rep 1 H3K27ac GSM1013130
26 GSM1127171_UCSD.Psoas_Muscle.H3K27ac.STL001.sga Psoas Muscle|H3K27ac|rep 2 H3K27ac GSM1127171
27 GSM910556_UCSD.Psoas_Muscle.H3K27ac.STL003.sga Psoas Muscle|H3K27ac|rep 3 H3K27ac GSM910556
28 GSM908953_UCSD.Psoas_Muscle.H3K27me3.STL003.sga Psoas Muscle|H3K27me3 H3K27me3 GSM908953
29 GSM1127181_UCSD.Psoas_Muscle.H3K36me3.STL001.sga Psoas Muscle|H3K36me3 H3K36me3 GSM1127181
30 GSM1059444_UCSD.Psoas_Muscle.H3K4me1.STL001.sga Psoas Muscle|H3K4me1|rep 1 H3K4me1 GSM1059444
31 GSM956021_UCSD.Psoas_Muscle.H3K4me1.STL003.sga Psoas Muscle|H3K4me1|rep 2 H3K4me1 GSM956021
32 GSM1120356_UCSD.Psoas_Muscle.H3K9me3.STL001.sga Psoas Muscle|H3K9me3 H3K9me3 GSM1120356
33 GSM1013166_UCSD.Psoas_Muscle.Input.STL001.sga Psoas Muscle|Input|rep 1 Input GSM1013166
34 GSM1013173_UCSD.Psoas_Muscle.Input.STL002.sga Psoas Muscle|Input|rep 2 Input GSM1013173
35 GSM906420_UCSD.Psoas_Muscle.Input.STL003.sga Psoas Muscle|Input|rep 3 Input GSM906420
36 GSM916064_BI.Skeletal_Muscle.H3K27ac.62.sga Skeletal Muscle|H3K27ac H3K27ac GSM916064
37 GSM621653_BI.Skeletal_Muscle.H3K27me3.19.sga Skeletal Muscle|H3K27me3|rep 1 H3K27me3 GSM621653
38 GSM621683_BI.Skeletal_Muscle.H3K27me3.62.sga Skeletal Muscle|H3K27me3|rep 2 H3K27me3 GSM621683
39 GSM621692_BI.Skeletal_Muscle.H3K27me3.63.sga Skeletal Muscle|H3K27me3|rep 3 H3K27me3 GSM621692
40 GSM621644_BI.Skeletal_Muscle.H3K36me3.19.sga Skeletal Muscle|H3K36me3|rep 1 H3K36me3 GSM621644
41 GSM621684_BI.Skeletal_Muscle.H3K36me3.62.sga Skeletal Muscle|H3K36me3|rep 2 H3K36me3 GSM621684
42 GSM621693_BI.Skeletal_Muscle.H3K36me3.63.sga Skeletal Muscle|H3K36me3|rep 3 H3K36me3 GSM621693
43 GSM621640_BI.Skeletal_Muscle.H3K4me1.19.sga Skeletal Muscle|H3K4me1|rep 1 H3K4me1 GSM621640
44 GSM621679_BI.Skeletal_Muscle.H3K4me1.63.sga Skeletal Muscle|H3K4me1|rep 2 H3K4me1 GSM621679
45 GSM621686_BI.Skeletal_Muscle.H3K4me1.62.sga Skeletal Muscle|H3K4me1|rep 3 H3K4me1 GSM621686
46 GSM621637_BI.Skeletal_Muscle.H3K4me3.19.sga Skeletal Muscle|H3K4me3|rep 1 H3K4me3 GSM621637
47 GSM621685_BI.Skeletal_Muscle.H3K4me3.62.sga Skeletal Muscle|H3K4me3|rep 2 H3K4me3 GSM621685
48 GSM621694_BI.Skeletal_Muscle.H3K4me3.63.sga Skeletal Muscle|H3K4me3|rep 3 H3K4me3 GSM621694
49 GSM621682_BI.Skeletal_Muscle.H3K9ac.62.sga Skeletal Muscle|H3K9ac|rep 1 H3K9ac GSM621682
50 GSM621688_BI.Skeletal_Muscle.H3K9ac.19.sga Skeletal Muscle|H3K9ac|rep 2 H3K9ac GSM621688
51 GSM621691_BI.Skeletal_Muscle.H3K9ac.63.sga Skeletal Muscle|H3K9ac|rep 3 H3K9ac GSM621691
52 GSM621632_BI.Skeletal_Muscle.H3K9me3.19.sga Skeletal Muscle|H3K9me3|rep 1 H3K9me3 GSM621632
53 GSM621681_BI.Skeletal_Muscle.H3K9me3.62.sga Skeletal Muscle|H3K9me3|rep 2 H3K9me3 GSM621681
54 GSM621690_BI.Skeletal_Muscle.H3K9me3.63.sga Skeletal Muscle|H3K9me3|rep 3 H3K9me3 GSM621690
55 GSM621641_BI.Skeletal_Muscle.Input.19.sga Skeletal Muscle|Input|rep 1 WCE GSM621641
56 GSM621680_BI.Skeletal_Muscle.Input.62.sga Skeletal Muscle|Input|rep 2 WCE GSM621680
57 GSM669948_BI.Skeletal_Muscle.Input.63.sga Skeletal Muscle|Input|rep 3 WCE GSM669948

DNase FAIRE data:

Filename Description Feature GEO-ID
1 GSM1027321_UW.Psoas_Muscle.ChromatinAccessibility.STL001.DNase.DS20325.sga Psoas Muscle|DNase-seq DNase-seq GSM1027321

Technical Notes

BED files were downloaded from the FTP and converted in SGA format using bed2sga (ChIP-seq).

References

Genome browser viewable files