Fetal placenta.

Description

This samples serie was produced as part of the RoadMap Project.

Source

Files downloaded from GEO FTP server: ftp://ftp.ncbi.nlm.nih.gov/pub/geo/DATA/roadmapepigenomics/by_sample/
Input file format: BED

Samples

From H. sapiens (Feb 2009 GRCh37/hg19).

ChIP-seq data:

	Filename	Description	Feature	GEO-ID
1	GSM1102784_UW.Fetal_Placenta.H3K27ac.H-24996.Histone.DS23301.sga	Fetal Placenta\|H3K27ac	H3K27ac	GSM1102784
2	GSM1160193_UW.Fetal_Placenta.H3K27me3.H-24996.Histone.DS23312.sga	Fetal Placenta\|H3K27me3	H3K27me3	GSM1160193
3	GSM1102792_UW.Fetal_Placenta.H3K36me3.H-24996.Histone.DS23030.sga	Fetal Placenta\|H3K36me3	H3K36me3	GSM1102792
4	GSM1102795_UW.Fetal_Placenta.H3K4me1.H-24996.Histone.DS23027.sga	Fetal Placenta\|H3K4me1	H3K4me1	GSM1102795
5	GSM1160199_UW.Fetal_Placenta.H3K4me3.H-24996.Histone.DS23300.sga	Fetal Placenta\|H3K4me3	H3K4me3	GSM1160199
6	GSM1160204_UW.Fetal_Placenta.H3K9me3.H-24996.Histone.DS23311.sga	Fetal Placenta\|H3K9me3	H3K9me3	GSM1160204
7	GSM1160206_UW.Fetal_Placenta.Input.H-24996.Histone.DS23024.sga	Fetal Placenta\|Input	Input	GSM1160206
8	GSM1127132_UCSF-UBC.Placenta_Amnion.H3K27ac.CTL02.sga	Placenta Amnion\|H3K27ac	H3K27ac	GSM1127132
9	GSM1127139_UCSF-UBC.Placenta_Amnion.H3K27me3.CTL02.sga	Placenta Amnion\|H3K27me3	H3K27me3	GSM1127139
10	GSM1127144_UCSF-UBC.Placenta_Amnion.H3K36me3.CTL02.sga	Placenta Amnion\|H3K36me3	H3K36me3	GSM1127144
11	GSM1127129_UCSF-UBC.Placenta_Amnion.H3K4me1.CTL02.sga	Placenta Amnion\|H3K4me1	H3K4me1	GSM1127129
12	GSM1127138_UCSF-UBC.Placenta_Amnion.H3K4me3.CTL02.sga	Placenta Amnion\|H3K4me3	H3K4me3	GSM1127138
13	GSM1127140_UCSF-UBC.Placenta_Amnion.H3K9me3.CTL02.sga	Placenta Amnion\|H3K9me3	H3K9me3	GSM1127140
14	GSM1127150_UCSF-UBC.Placenta_Amnion.Input.CTL02.sga	Placenta Amnion\|Input	Input	GSM1127150
15	GSM1127147_UCSF-UBC.Placenta_Chorion_Smooth.H3K27ac.CTL02.sga	Placenta Chorion Smooth\|H3K27ac	H3K27ac	GSM1127147
16	GSM1127146_UCSF-UBC.Placenta_Chorion_Smooth.H3K27me3.CTL02.sga	Placenta Chorion Smooth\|H3K27me3	H3K27me3	GSM1127146
17	GSM1127141_UCSF-UBC.Placenta_Chorion_Smooth.H3K36me3.CTL02.sga	Placenta Chorion Smooth\|H3K36me3	H3K36me3	GSM1127141
18	GSM1127136_UCSF-UBC.Placenta_Chorion_Smooth.H3K4me1.CTL02.sga	Placenta Chorion Smooth\|H3K4me1	H3K4me1	GSM1127136
19	GSM1127128_UCSF-UBC.Placenta_Chorion_Smooth.H3K4me3.CTL02.sga	Placenta Chorion Smooth\|H3K4me3	H3K4me3	GSM1127128
20	GSM1127148_UCSF-UBC.Placenta_Chorion_Smooth.Input.CTL02.sga	Placenta Chorion Smooth\|Input	Input	GSM1127148

DNase FAIRE data:

	Filename	Description	Feature	GEO-ID
1	GSM1027332_UW.Fetal_Placenta.ChromatinAccessibility.H-24510.DNase.DS20793.sga	Fetal Placenta\|DNase-seq\|rep 1	DNase-seq	GSM1027332
2	GSM1027343_UW.Fetal_Placenta.ChromatinAccessibility.H-24608.DNase.DS21111.sga	Fetal Placenta\|DNase-seq\|rep 2	DNase-seq	GSM1027343
3	GSM774215_UW.Fetal_Placenta.ChromatinAccessibility.H-23887.DS17639.sga	Fetal Placenta\|DNase-seq\|rep 3	DNase-seq	GSM774215
4	GSM774219_UW.Fetal_Placenta.ChromatinAccessibility.H-23914.DS17744.sga	Fetal Placenta\|DNase-seq\|rep 4	DNase-seq	GSM774219
5	GSM817219_UW.Fetal_Placenta.ChromatinAccessibility.H-24272.DS19391.sga	Fetal Placenta\|DNase-seq\|rep 5	DNase-seq	GSM817219
6	GSM878659_UW.Fetal_Placenta.ChromatinAccessibility.H-24409.DS20346.sga	Fetal Placenta\|DNase-seq\|rep 6	DNase-seq	GSM878659

Technical Notes

BED files were downloaded from the FTP and converted in SGA format using bed2sga (ChIP-seq).

References