Fetal skin.

Description

This samples serie was produced as part of the RoadMap Project.

Source

Files downloaded from GEO FTP server: ftp://ftp.ncbi.nlm.nih.gov/pub/geo/DATA/roadmapepigenomics/by_sample/
Input file format: BED

Samples

From Human Feb. 2009 (GRCh37/hg19) Assembly.

DNase FAIRE data:

Filename Description Feature GEO-ID
1 GSM817158_UW.Fetal_Skin.ChromatinAccessibility.H-22337.DS10987.sga Fetal Skin|DNase-seq DNase-seq GSM817158
2 GSM878635_UW.Fibroblasts_Fetal_Skin_Abdomen.ChromatinAccessibility.H-24259.DS19558.sga Fibroblasts Fetal Skin Abdomen|DNase-seq|rep 1 DNase-seq GSM878635
3 GSM878636_UW.Fibroblasts_Fetal_Skin_Abdomen.ChromatinAccessibility.H-24259.DS19561.sga Fibroblasts Fetal Skin Abdomen|DNase-seq|rep 2 DNase-seq GSM878636
4 GSM878623_UW.Fibroblasts_Fetal_Skin_Back.ChromatinAccessibility.H-24218.DS19174.sga Fibroblasts Fetal Skin Back|DNase-seq|rep 1 DNase-seq GSM878623
5 GSM878624_UW.Fibroblasts_Fetal_Skin_Back.ChromatinAccessibility.H-24218.DS19233.sga Fibroblasts Fetal Skin Back|DNase-seq|rep 2 DNase-seq GSM878624
6 GSM878644_UW.Fibroblasts_Fetal_Skin_Biceps_Left.ChromatinAccessibility.H-24259.DS19857.sga Fibroblasts Fetal Skin Biceps Left|DNase-seq|rep 1 DNase-seq GSM878644
7 GSM878645_UW.Fibroblasts_Fetal_Skin_Biceps_Left.ChromatinAccessibility.H-24259.DS19867.sga Fibroblasts Fetal Skin Biceps Left|DNase-seq|rep 2 DNase-seq GSM878645
8 GSM878642_UW.Fibroblasts_Fetal_Skin_Biceps_Right.ChromatinAccessibility.H-24259.DS19745.sga Fibroblasts Fetal Skin Biceps Right|DNase-seq|rep 1 DNase-seq GSM878642
9 GSM878643_UW.Fibroblasts_Fetal_Skin_Biceps_Right.ChromatinAccessibility.H-24259.DS19761.sga Fibroblasts Fetal Skin Biceps Right|DNase-seq|rep 2 DNase-seq GSM878643
10 GSM878648_UW.Fibroblasts_Fetal_Skin_Quadriceps_Left.ChromatinAccessibility.H-24259.DS20046.sga Fibroblasts Fetal Skin Quadriceps Left|DNase-seq|rep 1 DNase-seq GSM878648
11 GSM878649_UW.Fibroblasts_Fetal_Skin_Quadriceps_Left.ChromatinAccessibility.H-24259.DS20056.sga Fibroblasts Fetal Skin Quadriceps Left|DNase-seq|rep 2 DNase-seq GSM878649
12 GSM878646_UW.Fibroblasts_Fetal_Skin_Quadriceps_Right.ChromatinAccessibility.H-24259.DS19943.sga Fibroblasts Fetal Skin Quadriceps Right|DNase-seq|rep 1 DNase-seq GSM878646
13 GSM878647_UW.Fibroblasts_Fetal_Skin_Quadriceps_Right.ChromatinAccessibility.H-24259.DS19948.sga Fibroblasts Fetal Skin Quadriceps Right|DNase-seq|rep 2 DNase-seq GSM878647
14 GSM878640_UW.Fibroblasts_Fetal_Skin_Upper_Back.ChromatinAccessibility.H-24259.DS19696.sga Fibroblasts Fetal Skin Upper Back|DNase-seq|rep 1 DNase-seq GSM878640
15 GSM878641_UW.Fibroblasts_Fetal_Skin_Upper_Back.ChromatinAccessibility.H-24259.DS19706.sga Fibroblasts Fetal Skin Upper Back|DNase-seq|rep 2 DNase-seq GSM878641

Technical Notes

BED files were downloaded from the FTP and converted in SGA format using bed2sga (ChIP-seq).

References

Genome browser viewable files