Fetal thymus.

Description

This samples serie was produced as part of the RoadMap Project.

Source

Files downloaded from GEO FTP server: ftp://ftp.ncbi.nlm.nih.gov/pub/geo/DATA/roadmapepigenomics/by_sample/
Input file format: BED

Samples

From Human Feb. 2009 (GRCh37/hg19) Assembly.

ChIP-seq data:

Filename Description Feature GEO-ID
1 GSM1027289_UW.Fetal_Thymus.H3K27ac.H-24644.Histone.DS21783.sga Fetal Thymus|H3K27ac H3K27ac GSM1027289
2 GSM1027292_UW.Fetal_Thymus.H3K27me3.H-24644.Histone.DS22602.sga Fetal Thymus|H3K27me3 H3K27me3 GSM1027292
3 GSM1027295_UW.Fetal_Thymus.H3K36me3.H-24644.Histone.DS22603.sga Fetal Thymus|H3K36me3 H3K36me3 GSM1027295
4 GSM1027298_UW.Fetal_Thymus.H3K4me1.H-24644.Histone.DS22601.sga Fetal Thymus|H3K4me1 H3K4me1 GSM1027298
5 GSM1027299_UW.Fetal_Thymus.H3K4me3.H-24644.Histone.DS21539.sga Fetal Thymus|H3K4me3 H3K4me3 GSM1027299
6 GSM1027303_UW.Fetal_Thymus.H3K9me3.H-24644.Histone.DS22904.sga Fetal Thymus|H3K9me3 H3K9me3 GSM1027303
7 GSM1036258_UW.Fetal_Thymus.Input.H-24644.Histone.DS21508.sga Fetal Thymus|Input Input GSM1036258

DNase FAIRE data:

Filename Description Feature GEO-ID
1 GSM1027351_UW.Fetal_Thymus.Digital_Genomic_Footprinting.H-24409.DGF.DS20341.sga Fetal Thymus|DNase-HS DNase-HS GSM1027351
2 GSM1027313_UW.Fetal_Thymus.ChromatinAccessibility.H-24297.DNase.DS19675.sga Fetal Thymus|DNase-seq|rep 1 DNase-seq GSM1027313
3 GSM878656_UW.Fetal_Thymus.ChromatinAccessibility.H-24401.DS20335.sga Fetal Thymus|DNase-seq|rep 10 DNase-seq GSM878656
4 GSM878657_UW.Fetal_Thymus.ChromatinAccessibility.H-24409.DS20341.sga Fetal Thymus|DNase-seq|rep 11 DNase-seq GSM878657
5 GSM665823_UW.Fetal_Thymus.ChromatinAccessibility.H-23589.DS16490.sga Fetal Thymus|DNase-seq|rep 2 DNase-seq GSM665823
6 GSM701497_UW.Fetal_Thymus.ChromatinAccessibility.H-23769.DS17323.sga Fetal Thymus|DNase-seq|rep 3 DNase-seq GSM701497
7 GSM701513_UW.Fetal_Thymus.ChromatinAccessibility.H-23833.DS17474.sga Fetal Thymus|DNase-seq|rep 4 DNase-seq GSM701513
8 GSM701537_UW.Fetal_Thymus.ChromatinAccessibility.H-23964.DS17875.sga Fetal Thymus|DNase-seq|rep 5 DNase-seq GSM701537
9 GSM774204_UW.Fetal_Thymus.ChromatinAccessibility.H-23663.DS16841.sga Fetal Thymus|DNase-seq|rep 6 DNase-seq GSM774204
10 GSM774230_UW.Fetal_Thymus.ChromatinAccessibility.H-23964.DS17876.sga Fetal Thymus|DNase-seq|rep 7 DNase-seq GSM774230
11 GSM817172_UW.Fetal_Thymus.ChromatinAccessibility.H-24078.DS18382.sga Fetal Thymus|DNase-seq|rep 8 DNase-seq GSM817172
12 GSM878627_UW.Fetal_Thymus.ChromatinAccessibility.H-24259.DS19287.sga Fetal Thymus|DNase-seq|rep 9 DNase-seq GSM878627

Technical Notes

BED files were downloaded from the FTP and converted in SGA format using bed2sga (ChIP-seq).

References

Genome browser viewable files