Watanabe 2014, Identification of beta-catenin binding regions in SW480 cells.
ChIP-seq against beta-catenin in human colon cancer SW480 cells, IgG used ascontrol.
A peak file, provided by the authors, is added to the collection.
- Raw data was downloaded from GEO series:
- Input file format: SRA, BED
From Human Feb. 2009 (GRCh37/hg19) Assembly.
ChIP-seq peaks files:
FASTQ files were extracted from SRA files using fastq-dump
v2.5.0) and mapped to the genome
files were then converted into bam
and to bed using bamToBed v2.12.0
conversion was carried out using bed2sga.pl
Peak BED file was downloaded from GEO and converted to SGA bed2sga.pl as well.
Watanabe K, Biesinger J, Salmans ML, Roberts BS, Arthur WT, Cleary M, Andersen B, Xie X, Dai X
Integrative ChIP-seq/microarray analysis identifies a CTNNB1 target signature enriched in intestinal stem cells and colon cancer.
PLoS One. 2014 Mar 20;9(3):e92317. doi: 10.1371/journal.pone.0092317. eCollection 2014.
Identification of beta-catenin binding regions in SW480 cells