Yan 2013, Large collection of transcription factors profiling in LoVo cells .

Description

ChIP-seq in LoVo cells against highly expressed tanscription factors, CTCF, modified and variant histones, p300, subunits of cohesin (SMC1A, SMC3, and RAD21), the cohesin loading factor NIPBL and mediator subunits (MED1, MED12).
LoVo is a human colon adenocarcinoma cell line. IgG used as control.

Source

Samples

From Human Feb. 2009 (GRCh37/hg19) Assembly.

ChIP-seq data:

Filename Description Feature GEO-ID
1 GSM1208708_batch2_chrom1_LoVo_ADNP_Rabbit_FailedQC.sga LoVo cells|ADNP|FailedQC ADNP GSM1208708
2 GSM1208709_batch2_chrom1_LoVo_AEBP2_Goat_PassedQC.sga LoVo cells|AEBP2|PassedQC AEBP2 GSM1208709
3 GSM1208710_batch2_chrom1_LoVo_ALX4_Goat_FailedQC.sga LoVo cells|ALX4|FailedQC ALX4 GSM1208710
4 GSM1208590_batch1_chrom1_LoVo_ARNT_Mouse_PassedQC.sga LoVo cells|ARNT|PassedQC ARNT GSM1208590
5 GSM1208711_batch2_chrom1_LoVo_AR_Rabbit_FailedQC.sga LoVo cells|AR|FailedQC AR GSM1208711
6 GSM1208591_batch1_chrom1_LoVo_ASCL2_Mouse_PassedQC.sga LoVo cells|ASCL2|PassedQC ASCL2 GSM1208591
7 GSM1208712_batch2_chrom1_LoVo_ATF1_Rabbit_PassedQC.sga LoVo cells|ATF1|PassedQC ATF1 GSM1208712
8 GSM1208713_batch2_chrom1_LoVo_ATF5_Rabbit_PassedQC.sga LoVo cells|ATF5|PassedQC ATF5 GSM1208713
9 GSM1208592_batch1_chrom1_LoVo_ATOH1_Rabbit_PassedQC.sga LoVo cells|ATOH1|PassedQC ATOH1 GSM1208592
10 GSM1208714_batch2_chrom1_LoVo_BARHL1_Rabbit_PassedQC.sga LoVo cells|BARHL1|PassedQC BARHL1 GSM1208714
11 GSM1208593_batch1_chrom1_LoVo_BARX2_Goat_PassedQC.sga LoVo cells|BARX2|PassedQC BARX2 GSM1208593
12 GSM1208715_batch2_chrom1_LoVo_BTF3_Mouse_FailedQC.sga LoVo cells|BTF3|FailedQC BTF3 GSM1208715
13 GSM1208594_batch1_chrom1_LoVo_CAMTA2_Goat_PassedQC.sga LoVo cells|CAMTA2|PassedQC CAMTA2 GSM1208594
14 GSM1208595_batch1_chrom1_LoVo_CASP8AP2_Rabbit_PassedQC.sga LoVo cells|CASP8AP2|PassedQC CASP8AP2 GSM1208595
15 GSM1208596_batch1_chrom1_LoVo_CASZ1_Rabbit_FailedQC.sga LoVo cells|CASZ1|FailedQC CASZ1 GSM1208596
16 GSM1208716_batch2_chrom1_LoVo_CBFB_Mouse_FailedQC.sga LoVo cells|CBFB|FailedQC CBFB GSM1208716
17 GSM1208597_batch1_chrom1_LoVo_CDX2_Rabbit_FailedQC.sga LoVo cells|CDX2|FailedQC CDX2 GSM1208597
18 GSM1208598_batch1_chrom1_LoVo_CEBPB_Rabbit_PassedQC.sga LoVo cells|CEBPB|PassedQC CEBPB GSM1208598
19 GSM1208717_batch2_chrom1_LoVo_CEBPE_Goat_FailedQC.sga LoVo cells|CEBPE|FailedQC CEBPE GSM1208717
20 GSM1208599_batch1_chrom1_LoVo_CEBPG_Rabbit_PassedQC.sga LoVo cells|CEBPG|PassedQC CEBPG GSM1208599
21 GSM1208600_batch1_chrom1_LoVo_CEBPZ_Goat_FailedQC.sga LoVo cells|CEBPZ|FailedQC CEBPZ GSM1208600
22 GSM1208718_batch2_chrom1_LoVo_CIC_Goat_FailedQC.sga LoVo cells|CIC|FailedQC CIC GSM1208718
23 GSM1208719_batch2_chrom1_LoVo_CLOCK_Rabbit_PassedQC.sga LoVo cells|CLOCK|PassedQC CLOCK GSM1208719
24 GSM1208601_batch1_chrom1_LoVo_CREB3L2_Goat_FailedQC.sga LoVo cells|CREB3L2|FailedQC CREB3L2 GSM1208601
25 GSM1208721_batch2_chrom1_LoVo_CREB3L4_Goat_PassedQC.sga LoVo cells|CREB3L4|PassedQC CREB3L4 GSM1208721
26 GSM1208720_batch2_chrom1_LoVo_CREB3_Goat_FailedQC.sga LoVo cells|CREB3|FailedQC CREB3 GSM1208720
27 GSM1208722_batch2_chrom1_LoVo_CREM_Goat_FailedQC.sga LoVo cells|CREM|FailedQC CREM GSM1208722
28 GSM1208602_batch1_chrom1_LoVo_CSDA_Goat_FailedQC.sga LoVo cells|CSDA|FailedQC CSDA GSM1208602
29 GSM1208603_batch1_chrom1_LoVo_CTCF_Goat_PassedQC.sga LoVo cells|CTCF|PassedQC CTCF GSM1208603
30 GSM1208604_batch1_chrom1_LoVo_CUX1_Rabbit_FailedQC.sga LoVo cells|CUX1|FailedQC CUX1 GSM1208604
31 GSM1208605_batch1_chrom1_LoVo_DBP_Rabbit_PassedQC.sga LoVo cells|DBP|PassedQC DBP GSM1208605
32 GSM1208723_batch2_chrom1_LoVo_DLX1_Mouse_PassedQC.sga LoVo cells|DLX1|PassedQC DLX1 GSM1208723
33 GSM1208724_batch2_chrom1_LoVo_DLX2_Goat_FailedQC.sga LoVo cells|DLX2|FailedQC DLX2 GSM1208724
34 GSM1208725_batch2_chrom1_LoVo_DLX4_Goat_FailedQC.sga LoVo cells|DLX4|FailedQC DLX4 GSM1208725
35 GSM1208726_batch2_chrom1_LoVo_DLX6_Goat_FailedQC.sga LoVo cells|DLX6|FailedQC DLX6 GSM1208726
36 GSM1208727_batch2_chrom1_LoVo_DMRT1_Goat_FailedQC.sga LoVo cells|DMRT1|FailedQC DMRT1 GSM1208727
37 GSM1208728_batch2_chrom1_LoVo_E2F1_Mouse_FailedQC.sga LoVo cells|E2F1|FailedQC E2F1 GSM1208728
38 GSM1208606_batch1_chrom1_LoVo_E2F2_Rabbit_PassedQC.sga LoVo cells|E2F2|PassedQC E2F2 GSM1208606
39 GSM1208729_batch2_chrom1_LoVo_E2F3_Mouse_PassedQC.sga LoVo cells|E2F3|PassedQC E2F3 GSM1208729
40 GSM1208607_batch1_chrom1_LoVo_E2F4_Mouse_PassedQC.sga LoVo cells|E2F4|PassedQC E2F4 GSM1208607
41 GSM1208730_batch2_chrom1_LoVo_E2F7_Rabbit_PassedQC.sga LoVo cells|E2F7|PassedQC E2F7 GSM1208730
42 GSM1208731_batch2_chrom1_LoVo_E2F8_Goat_PassedQC.sga LoVo cells|E2F8|PassedQC E2F8 GSM1208731
43 GSM1208608_batch1_chrom1_LoVo_EGR1_Rabbit_PassedQC.sga LoVo cells|EGR1|PassedQC EGR1 GSM1208608
44 GSM1208609_batch1_chrom1_LoVo_EHF_Mouse_PassedQC.sga LoVo cells|EHF|PassedQC EHF GSM1208609
45 GSM1208610_batch1_chrom1_LoVo_ELF1_Mouse_PassedQC.sga LoVo cells|ELF1|PassedQC ELF1 GSM1208610
46 GSM1208612_batch1_chrom1_LoVo_ELF2_Goat_FailedQC.sga LoVo cells|ELF2|FailedQC ELF2 GSM1208612
47 GSM1208732_batch2_chrom1_LoVo_ELF3_Rabbit_FailedQC.sga LoVo cells|ELF3|FailedQC ELF3 GSM1208732
48 GSM1208733_batch2_chrom1_LoVo_EMX1_Rabbit_FailedQC.sga LoVo cells|EMX1|FailedQC EMX1 GSM1208733
49 GSM1208734_batch2_chrom1_LoVo_EOMES_Rabbit_FailedQC.sga LoVo cells|EOMES|FailedQC EOMES GSM1208734
50 GSM1208613_batch1_chrom1_LoVo_EP300_Rabbit_FailedQC.sga LoVo cells|EP300|FailedQC EP300 GSM1208613
51 GSM1208614_batch1_chrom1_LoVo_ERF_Goat_FailedQC.sga LoVo cells|ERF|FailedQC ERF GSM1208614
52 GSM1208735_batch2_chrom1_LoVo_ERG_Mouse_FailedQC.sga LoVo cells|ERG|FailedQC ERG GSM1208735
53 GSM1208736_batch2_chrom1_LoVo_ERM_Rabbit_PassedQC.sga LoVo cells|ERM|PassedQC ERM GSM1208736
54 GSM1208737_batch2_chrom1_LoVo_ESR1_Mouse_PassedQC.sga LoVo cells|ESR1|PassedQC ESR1 GSM1208737
55 GSM1208615_batch1_chrom1_LoVo_ESRRA_Rabbit_PassedQC.sga LoVo cells|ESRRA|PassedQC ESRRA GSM1208615
56 GSM1208738_batch2_chrom1_LoVo_ETS2_Rabbit_PassedQC.sga LoVo cells|ETS2|PassedQC ETS2 GSM1208738
57 GSM1208616_batch1_chrom1_LoVo_ETV4_Mouse_PassedQC.sga LoVo cells|ETV4|PassedQC ETV4 GSM1208616
58 GSM1208739_batch2_chrom1_LoVo_ETV7_Goat_PassedQC.sga LoVo cells|ETV7|PassedQC ETV7 GSM1208739
59 GSM1208740_batch2_chrom1_LoVo_EVI1_Rabbit_PassedQC.sga LoVo cells|EVI1|PassedQC EVI1 GSM1208740
60 GSM1208741_batch2_chrom1_LoVo_EZH2_Mouse_FailedQC.sga LoVo cells|EZH2|FailedQC EZH2 GSM1208741
61 GSM1208742_batch2_chrom1_LoVo_FEV_Goat_PassedQC.sga LoVo cells|FEV|PassedQC FEV GSM1208742
62 GSM1208744_batch2_chrom1_LoVo_FOXA1_Rabbit_FailedQC.sga LoVo cells|FOXA1|FailedQC FOXA1 GSM1208744
63 GSM1208745_batch2_chrom1_LoVo_FOXD2_Goat_PassedQC.sga LoVo cells|FOXD2|PassedQC FOXD2 GSM1208745
64 GSM1208746_batch2_chrom1_LoVo_FOXG1_Rabbit_PassedQC.sga LoVo cells|FOXG1|PassedQC FOXG1 GSM1208746
65 GSM1208747_batch2_chrom1_LoVo_FOXK2_Rabbit_FailedQC.sga LoVo cells|FOXK2|FailedQC FOXK2 GSM1208747
66 GSM1208617_batch1_chrom1_LoVo_FOXM1_Mouse_FailedQC.sga LoVo cells|FOXM1|FailedQC FOXM1 GSM1208617
67 GSM1208618_batch1_chrom1_LoVo_FOXO3_Mouse_FailedQC.sga LoVo cells|FOXO3|FailedQC FOXO3 GSM1208618
68 GSM1208748_batch2_chrom1_LoVo_FOXP3_Mouse_FailedQC.sga LoVo cells|FOXP3|FailedQC FOXP3 GSM1208748
69 GSM1208749_batch2_chrom1_LoVo_GATA1_Rabbit_PassedQC.sga LoVo cells|GATA1|PassedQC GATA1 GSM1208749
70 GSM1208619_batch1_chrom1_LoVo_GATA2_Goat_FailedQC.sga LoVo cells|GATA2|FailedQC GATA2 GSM1208619
71 GSM1208620_batch1_chrom1_LoVo_GATA4_Rabbit_PassedQC.sga LoVo cells|GATA4|PassedQC GATA4 GSM1208620
72 GSM1208621_batch1_chrom1_LoVo_GATA6_Rabbit_PassedQC.sga LoVo cells|GATA6|PassedQC GATA6 GSM1208621
73 GSM1208750_batch2_chrom1_LoVo_GLI1_Mouse_FailedQC.sga LoVo cells|GLI1|FailedQC GLI1 GSM1208750
74 GSM1208622_batch1_chrom1_LoVo_GLI2_Rabbit_PassedQC.sga LoVo cells|GLI2|PassedQC GLI2 GSM1208622
75 GSM1208751_batch2_chrom1_LoVo_GLI3_Mouse_PassedQC.sga LoVo cells|GLI3|PassedQC GLI3 GSM1208751
76 GSM1208752_batch2_chrom1_LoVo_GLIS1_Goat_PassedQC.sga LoVo cells|GLIS1|PassedQC GLIS1 GSM1208752
77 GSM1208623_batch1_chrom1_LoVo_GLIS2_Goat_FailedQC.sga LoVo cells|GLIS2|FailedQC GLIS2 GSM1208623
78 GSM1208624_batch1_chrom1_LoVo_GLIS3_Goat_FailedQC.sga LoVo cells|GLIS3|FailedQC GLIS3 GSM1208624
79 GSM1208625_batch1_chrom1_LoVo_GMEB1_Rabbit_PassedQC.sga LoVo cells|GMEB1|PassedQC GMEB1 GSM1208625
80 GSM1208626_batch1_chrom1_LoVo_GMEB2_Rabbit_PassedQC.sga LoVo cells|GMEB2|PassedQC GMEB2 GSM1208626
81 GSM1208810_batch1_chrom1_LoVo_H3K4me1_Rabbit_PassedQC.sga LoVo cells|H3K4me1|PassedQC H3K4me1 GSM1208810
82 GSM1208811_batch1_chrom1_LoVo_H3K4me3_Rabbit_PassedQC.sga LoVo cells|H3K4me3|PassedQC H3K4me3 GSM1208811
83 GSM1208809_batch1_chrom1_LoVo_H3_Rabbit_PassedQC.sga LoVo cells|H3|PassedQC H3 GSM1208809
84 GSM1208627_batch1_chrom1_LoVo_HBP1_Rabbit_PassedQC.sga LoVo cells|HBP1|PassedQC HBP1 GSM1208627
85 GSM1208628_batch1_chrom1_LoVo_HES1_Goat_FailedQC.sga LoVo cells|HES1|FailedQC HES1 GSM1208628
86 GSM1208629_batch1_chrom1_LoVo_HES2_Mouse_PassedQC.sga LoVo cells|HES2|PassedQC HES2 GSM1208629
87 GSM1208630_batch1_chrom1_LoVo_HES4_Rabbit_PassedQC.sga LoVo cells|HES4|PassedQC HES4 GSM1208630
88 GSM1208753_batch2_chrom1_LoVo_HIF1A_Mouse_FailedQC.sga LoVo cells|HIF1A|FailedQC HIF1A GSM1208753
89 GSM1208631_batch1_chrom1_LoVo_HINFP_Goat_PassedQC.sga LoVo cells|HINFP|PassedQC HINFP GSM1208631
90 GSM1208754_batch2_chrom1_LoVo_HIVEP1_Rabbit_FailedQC.sga LoVo cells|HIVEP1|FailedQC HIVEP1 GSM1208754
91 GSM1208755_batch2_chrom1_LoVo_HMGA1_Goat_FailedQC.sga LoVo cells|HMGA1|FailedQC HMGA1 GSM1208755
92 GSM1208632_batch1_chrom1_LoVo_HNF4A_Rabbit_PassedQC.sga LoVo cells|HNF4A|PassedQC HNF4A GSM1208632
93 GSM1208633_batch1_chrom1_LoVo_HOXA10_Rabbit_PassedQC.sga LoVo cells|HOXA10|PassedQC HOXA10 GSM1208633
94 GSM1208756_batch2_chrom1_LoVo_HOXA13_Rabbit_PassedQC.sga LoVo cells|HOXA13|PassedQC HOXA13 GSM1208756
95 GSM1208634_batch1_chrom1_LoVo_HOXA1_Rabbit_PassedQC.sga LoVo cells|HOXA1|PassedQC HOXA1 GSM1208634
96 GSM1208757_batch2_chrom1_LoVo_HOXA2_Rabbit_PassedQC.sga LoVo cells|HOXA2|PassedQC HOXA2 GSM1208757
97 GSM1208635_batch1_chrom1_LoVo_HOXA7_Rabbit_PassedQC.sga LoVo cells|HOXA7|PassedQC HOXA7 GSM1208635
98 GSM1208636_batch1_chrom1_LoVo_HOXB13_Rabbit_FailedQC.sga LoVo cells|HOXB13|FailedQC HOXB13 GSM1208636
99 GSM1208758_batch2_chrom1_LoVo_HOXC6_Rabbit_PassedQC.sga LoVo cells|HOXC6|PassedQC HOXC6 GSM1208758
100 GSM1208759_batch2_chrom1_LoVo_HSF1_Mouse_FailedQC.sga LoVo cells|HSF1|FailedQC HSF1 GSM1208759
101 GSM1208637_batch1_chrom1_LoVo_HSF2_Mouse_FailedQC.sga LoVo cells|HSF2|FailedQC HSF2 GSM1208637
102 GSM1208760_batch2_chrom1_LoVo_HSF4_Goat_FailedQC.sga LoVo cells|HSF4|FailedQC HSF4 GSM1208760
103 GSM1208638_batch1_chrom1_LoVo_IRX3_Mouse_PassedQC.sga LoVo cells|IRX3|PassedQC IRX3 GSM1208638
104 GSM1208761_batch2_chrom1_LoVo_ISL1_Rabbit_FailedQC.sga LoVo cells|ISL1|FailedQC ISL1 GSM1208761
105 GSM1208812_batch1_chrom1_LoVo_IgG_Mouse.sga LoVo cells|IgG| IgG GSM1208812
106 GSM1208813_batch1_chrom1_LoVo_IgG_Rabbit.sga LoVo cells|IgG| IgG GSM1208813
107 GSM1208814_batch1_chrom1_LoVo_IgG_Goat.sga LoVo cells|IgG| IgG GSM1208814
108 GSM1208762_batch2_chrom1_LoVo_JDP2_Goat_FailedQC.sga LoVo cells|JDP2|FailedQC JDP2 GSM1208762
109 GSM1208763_batch2_chrom1_LoVo_JUND_Rabbit_PassedQC.sga LoVo cells|JUND|PassedQC JUND GSM1208763
110 GSM1208639_batch1_chrom1_LoVo_JUN_Mouse_PassedQC.sga LoVo cells|JUN|PassedQC JUN GSM1208639
111 GSM1208640_batch1_chrom1_LoVo_KLF10_Goat_FailedQC.sga LoVo cells|KLF10|FailedQC KLF10 GSM1208640
112 GSM1208641_batch1_chrom1_LoVo_KLF3_Goat_PassedQC.sga LoVo cells|KLF3|PassedQC KLF3 GSM1208641
113 GSM1208642_batch1_chrom1_LoVo_KLF5_Rabbit_PassedQC.sga LoVo cells|KLF5|PassedQC KLF5 GSM1208642
114 GSM1208643_batch1_chrom1_LoVo_LEF1_Rabbit_FailedQC.sga LoVo cells|LEF1|FailedQC LEF1 GSM1208643
115 GSM1208644_batch1_chrom1_LoVo_LHX2_Goat_PassedQC.sga LoVo cells|LHX2|PassedQC LHX2 GSM1208644
116 GSM1208764_batch2_chrom1_LoVo_LHX3_Goat_FailedQC.sga LoVo cells|LHX3|FailedQC LHX3 GSM1208764
117 GSM1208765_batch2_chrom1_LoVo_LIN9_Mouse_FailedQC.sga LoVo cells|LIN9|FailedQC LIN9 GSM1208765
118 GSM1208766_batch2_chrom1_LoVo_LMX1B_Goat_FailedQC.sga LoVo cells|LMX1B|FailedQC LMX1B GSM1208766
119 GSM1208767_batch2_chrom1_LoVo_LYL1_Rabbit_PassedQC.sga LoVo cells|LYL1|PassedQC LYL1 GSM1208767
120 GSM1208645_batch1_chrom1_LoVo_MAX_Mouse_FailedQC.sga LoVo cells|MAX|FailedQC MAX GSM1208645
121 GSM1208768_batch2_chrom1_LoVo_MAZ_Rabbit_PassedQC.sga LoVo cells|MAZ|PassedQC MAZ GSM1208768
122 GSM1208646_batch1_chrom1_LoVo_MED12_Rabbit_PassedQC.sga LoVo cells|MED12|PassedQC MED12 GSM1208646
123 GSM1208647_batch1_chrom1_LoVo_MED1_Rabbit_PassedQC.sga LoVo cells|MED1|PassedQC MED1 GSM1208647
124 GSM1208648_batch1_chrom1_LoVo_MEF2A_Mouse_FailedQC.sga LoVo cells|MEF2A|FailedQC MEF2A GSM1208648
125 GSM1208649_batch1_chrom1_LoVo_MEF2C_Rabbit_PassedQC.sga LoVo cells|MEF2C|PassedQC MEF2C GSM1208649
126 GSM1208769_batch2_chrom1_LoVo_MEF2D_Goat_FailedQC.sga LoVo cells|MEF2D|FailedQC MEF2D GSM1208769
127 GSM1208650_batch1_chrom1_LoVo_MEIS2_Rabbit_FailedQC.sga LoVo cells|MEIS2|FailedQC MEIS2 GSM1208650
128 GSM1208770_batch2_chrom1_LoVo_MEIS3_Goat_FailedQC.sga LoVo cells|MEIS3|FailedQC MEIS3 GSM1208770
129 GSM1208771_batch2_chrom1_LoVo_MNT_Rabbit_PassedQC.sga LoVo cells|MNT|PassedQC MNT GSM1208771
130 GSM1208772_batch2_chrom1_LoVo_MSX1_Goat_FailedQC.sga LoVo cells|MSX1|FailedQC MSX1 GSM1208772
131 GSM1208651_batch1_chrom1_LoVo_MSX2_Goat_FailedQC.sga LoVo cells|MSX2|FailedQC MSX2 GSM1208651
132 GSM1208773_batch2_chrom1_LoVo_MXD1_Mouse_FailedQC.sga LoVo cells|MXD1|FailedQC MXD1 GSM1208773
133 GSM1208653_batch1_chrom1_LoVo_MYBL2_Rabbit_PassedQC.sga LoVo cells|MYBL2|PassedQC MYBL2 GSM1208653
134 GSM1208652_batch1_chrom1_LoVo_MYB_Rabbit_PassedQC.sga LoVo cells|MYB|PassedQC MYB GSM1208652
135 GSM1208654_batch1_chrom1_LoVo_MYC_Rabbit_PassedQC.sga LoVo cells|MYC|PassedQC MYC GSM1208654
136 GSM1208655_batch1_chrom1_LoVo_MZF1_Rabbit_PassedQC.sga LoVo cells|MZF1|PassedQC MZF1 GSM1208655
137 GSM1208656_batch1_chrom1_LoVo_NEUROG3_Mouse_PassedQC.sga LoVo cells|NEUROG3|PassedQC NEUROG3 GSM1208656
138 GSM1208657_batch1_chrom1_LoVo_NFAT5_Rabbit_PassedQC.sga LoVo cells|NFAT5|PassedQC NFAT5 GSM1208657
139 GSM1208774_batch2_chrom1_LoVo_NFATC1_Mouse_FailedQC.sga LoVo cells|NFATC1|FailedQC NFATC1 GSM1208774
140 GSM1208658_batch1_chrom1_LoVo_NFATC3_Goat_FailedQC.sga LoVo cells|NFATC3|FailedQC NFATC3 GSM1208658
141 GSM1208775_batch2_chrom1_LoVo_NFATC4_Mouse_FailedQC.sga LoVo cells|NFATC4|FailedQC NFATC4 GSM1208775
142 GSM1208659_batch1_chrom1_LoVo_NFE2L2_Rabbit_PassedQC.sga LoVo cells|NFE2L2|PassedQC NFE2L2 GSM1208659
143 GSM1208660_batch1_chrom1_LoVo_NFIL3_Mouse_PassedQC.sga LoVo cells|NFIL3|PassedQC NFIL3 GSM1208660
144 GSM1208776_batch2_chrom1_LoVo_NFKB2_Mouse_PassedQC.sga LoVo cells|NFKB2|PassedQC NFKB2 GSM1208776
145 GSM1208777_batch2_chrom1_LoVo_NFYA_Mouse_PassedQC.sga LoVo cells|NFYA|PassedQC NFYA GSM1208777
146 GSM1208661_batch1_chrom1_LoVo_NIPBL_Rabbit_PassedQC.sga LoVo cells|NIPBL|PassedQC NIPBL GSM1208661
147 GSM1208778_batch2_chrom1_LoVo_NKX2-1_Mouse_FailedQC.sga LoVo cells|NKX2-1|FailedQC NKX2-1 GSM1208778
148 GSM1208779_batch2_chrom1_LoVo_NKX2-5_Rabbit_FailedQC.sga LoVo cells|NKX2-5|FailedQC NKX2-5 GSM1208779
149 GSM1208780_batch2_chrom1_LoVo_NKX2.2_Rabbit_PassedQC.sga LoVo cells|NKX2.2|PassedQC NKX2.2 GSM1208780
150 GSM1208781_batch2_chrom1_LoVo_NKX3-1_Rabbit_FailedQC.sga LoVo cells|NKX3-1|FailedQC NKX3-1 GSM1208781
151 GSM1208662_batch1_chrom1_LoVo_NPAT_Rabbit_PassedQC.sga LoVo cells|NPAT|PassedQC NPAT GSM1208662
152 GSM1208663_batch1_chrom1_LoVo_NR1H3_Goat_FailedQC.sga LoVo cells|NR1H3|FailedQC NR1H3 GSM1208663
153 GSM1208664_batch1_chrom1_LoVo_NR2F1_Mouse_PassedQC.sga LoVo cells|NR2F1|PassedQC NR2F1 GSM1208664
154 GSM1208665_batch1_chrom1_LoVo_NR2F2_Goat_PassedQC.sga LoVo cells|NR2F2|PassedQC NR2F2 GSM1208665
155 GSM1208666_batch1_chrom1_LoVo_NR3C1_Rabbit_PassedQC.sga LoVo cells|NR3C1|PassedQC NR3C1 GSM1208666
156 GSM1208782_batch2_chrom1_LoVo_OTX1_Goat_FailedQC.sga LoVo cells|OTX1|FailedQC OTX1 GSM1208782
157 GSM1208783_batch2_chrom1_LoVo_PATZ1_Rabbit_FailedQC.sga LoVo cells|PATZ1|FailedQC PATZ1 GSM1208783
158 GSM1208784_batch2_chrom1_LoVo_PAX2_Rabbit_FailedQC.sga LoVo cells|PAX2|FailedQC PAX2 GSM1208784
159 GSM1208785_batch2_chrom1_LoVo_PDX1_Goat_FailedQC.sga LoVo cells|PDX1|FailedQC PDX1 GSM1208785
160 GSM1208786_batch2_chrom1_LoVo_PHF20_Goat_FailedQC.sga LoVo cells|PHF20|FailedQC PHF20 GSM1208786
161 GSM1208667_batch1_chrom1_LoVo_PITX1_Goat_FailedQC.sga LoVo cells|PITX1|FailedQC PITX1 GSM1208667
162 GSM1208668_batch1_chrom1_LoVo_RAD21_Rabbit_PassedQC.sga LoVo cells|RAD21|PassedQC RAD21 GSM1208668
163 GSM1208787_batch2_chrom1_LoVo_RARA_Goat_FailedQC.sga LoVo cells|RARA|FailedQC RARA GSM1208787
164 GSM1208788_batch2_chrom1_LoVo_RARG_Mouse_PassedQC.sga LoVo cells|RARG|PassedQC RARG GSM1208788
165 GSM1208669_batch1_chrom1_LoVo_RAX2_Goat_FailedQC.sga LoVo cells|RAX2|FailedQC RAX2 GSM1208669
166 GSM1208789_batch2_chrom1_LoVo_RBCK1_Goat_PassedQC.sga LoVo cells|RBCK1|PassedQC RBCK1 GSM1208789
167 GSM1208790_batch2_chrom1_LoVo_REST_Rabbit_PassedQC.sga LoVo cells|REST|PassedQC REST GSM1208790
168 GSM1208670_batch1_chrom1_LoVo_RFX1_Mouse_PassedQC.sga LoVo cells|RFX1|PassedQC RFX1 GSM1208670
169 GSM1208671_batch1_chrom1_LoVo_RFX2_Goat_PassedQC.sga LoVo cells|RFX2|PassedQC RFX2 GSM1208671
170 GSM1208672_batch1_chrom1_LoVo_RFX5_Rabbit_PassedQC.sga LoVo cells|RFX5|PassedQC RFX5 GSM1208672
171 GSM1208791_batch2_chrom1_LoVo_RORA_Rabbit_FailedQC.sga LoVo cells|RORA|FailedQC RORA GSM1208791
172 GSM1208673_batch1_chrom1_LoVo_RXRA_Rabbit_PassedQC.sga LoVo cells|RXRA|PassedQC RXRA GSM1208673
173 GSM1208792_batch2_chrom1_LoVo_SATB1_Rabbit_FailedQC.sga LoVo cells|SATB1|FailedQC SATB1 GSM1208792
174 GSM1208793_batch2_chrom1_LoVo_SMAD1_Goat_FailedQC.sga LoVo cells|SMAD1|FailedQC SMAD1 GSM1208793
175 GSM1208674_batch1_chrom1_LoVo_SMAD2_Goat_PassedQC.sga LoVo cells|SMAD2|PassedQC SMAD2 GSM1208674
176 GSM1208676_batch1_chrom1_LoVo_SMAD3_Mouse_PassedQC.sga LoVo cells|SMAD3|PassedQC SMAD3 GSM1208676
177 GSM1208677_batch1_chrom1_LoVo_SMAD4_Mouse_FailedQC.sga LoVo cells|SMAD4|FailedQC SMAD4 GSM1208677
178 GSM1208678_batch1_chrom1_LoVo_SMC1A_Rabbit_PassedQC.sga LoVo cells|SMC1A|PassedQC SMC1A GSM1208678
179 GSM1208679_batch1_chrom1_LoVo_SMC3_Rabbit_PassedQC.sga LoVo cells|SMC3|PassedQC SMC3 GSM1208679
180 GSM1208680_batch1_chrom1_LoVo_SNAI1_Goat_FailedQC.sga LoVo cells|SNAI1|FailedQC SNAI1 GSM1208680
181 GSM1208794_batch2_chrom1_LoVo_SOX2_Goat_PassedQC.sga LoVo cells|SOX2|PassedQC SOX2 GSM1208794
182 GSM1208795_batch2_chrom1_LoVo_SOX3_Rabbit_FailedQC.sga LoVo cells|SOX3|FailedQC SOX3 GSM1208795
183 GSM1208681_batch1_chrom1_LoVo_SOX4_Rabbit_PassedQC.sga LoVo cells|SOX4|PassedQC SOX4 GSM1208681
184 GSM1208682_batch1_chrom1_LoVo_SOX9_Rabbit_FailedQC.sga LoVo cells|SOX9|FailedQC SOX9 GSM1208682
185 GSM1208683_batch1_chrom1_LoVo_SP1_Mouse_PassedQC.sga LoVo cells|SP1|PassedQC SP1 GSM1208683
186 GSM1208796_batch2_chrom1_LoVo_SP2_Mouse_PassedQC.sga LoVo cells|SP2|PassedQC SP2 GSM1208796
187 GSM1208684_batch1_chrom1_LoVo_SP3_Mouse_PassedQC.sga LoVo cells|SP3|PassedQC SP3 GSM1208684
188 GSM1208797_batch2_chrom1_LoVo_SPIB_Goat_FailedQC.sga LoVo cells|SPIB|FailedQC SPIB GSM1208797
189 GSM1208798_batch2_chrom1_LoVo_SREBF1_Mouse_FailedQC.sga LoVo cells|SREBF1|FailedQC SREBF1 GSM1208798
190 GSM1208685_batch1_chrom1_LoVo_SREBF2_Mouse_FailedQC.sga LoVo cells|SREBF2|FailedQC SREBF2 GSM1208685
191 GSM1208686_batch1_chrom1_LoVo_SRF_Mouse_FailedQC.sga LoVo cells|SRF|FailedQC SRF GSM1208686
192 GSM1208799_batch2_chrom1_LoVo_STAT3_Mouse_FailedQC.sga LoVo cells|STAT3|FailedQC STAT3 GSM1208799
193 GSM1208687_batch1_chrom1_LoVo_TBX3_Mouse_PassedQC.sga LoVo cells|TBX3|PassedQC TBX3 GSM1208687
194 GSM1208688_batch1_chrom1_LoVo_TCF12_Mouse_PassedQC.sga LoVo cells|TCF12|PassedQC TCF12 GSM1208688
195 GSM1208801_batch2_chrom1_LoVo_TCF3_Mouse_FailedQC.sga LoVo cells|TCF3|FailedQC TCF3 GSM1208801
196 GSM1208689_batch1_chrom1_LoVo_TCF7L2_Mouse_PassedQC.sga LoVo cells|TCF7L2|PassedQC TCF7L2 GSM1208689
197 GSM1208802_batch2_chrom1_LoVo_TEAD2_Rabbit_PassedQC.sga LoVo cells|TEAD2|PassedQC TEAD2 GSM1208802
198 GSM1208803_batch2_chrom1_LoVo_TEL_Mouse_FailedQC.sga LoVo cells|TEL|FailedQC TEL GSM1208803
199 GSM1208690_batch1_chrom1_LoVo_TFAP2A_Rabbit_PassedQC.sga LoVo cells|TFAP2A|PassedQC TFAP2A GSM1208690
200 GSM1208691_batch1_chrom1_LoVo_TFDP1_Goat_PassedQC.sga LoVo cells|TFDP1|PassedQC TFDP1 GSM1208691
201 GSM1208692_batch1_chrom1_LoVo_TFDP2_Mouse_FailedQC.sga LoVo cells|TFDP2|FailedQC TFDP2 GSM1208692
202 GSM1208693_batch1_chrom1_LoVo_TFE3_Rabbit_FailedQC.sga LoVo cells|TFE3|FailedQC TFE3 GSM1208693
203 GSM1208694_batch1_chrom1_LoVo_TFEB_Mouse_FailedQC.sga LoVo cells|TFEB|FailedQC TFEB GSM1208694
204 GSM1208695_batch1_chrom1_LoVo_TGIF1_Mouse_FailedQC.sga LoVo cells|TGIF1|FailedQC TGIF1 GSM1208695
205 GSM1208804_batch2_chrom1_LoVo_TOX4_Goat_FailedQC.sga LoVo cells|TOX4|FailedQC TOX4 GSM1208804
206 GSM1208696_batch1_chrom1_LoVo_TP53_Mouse_FailedQC.sga LoVo cells|TP53|FailedQC TP53 GSM1208696
207 GSM1208805_batch2_chrom1_LoVo_TP73_Rabbit_PassedQC.sga LoVo cells|TP73|PassedQC TP73 GSM1208805
208 GSM1208806_batch2_chrom1_LoVo_TRPS1_Goat_FailedQC.sga LoVo cells|TRPS1|FailedQC TRPS1 GSM1208806
209 GSM1208800_batch2_chrom1_LoVo_T_Mouse_FailedQC.sga LoVo cells|T|FailedQC T GSM1208800
210 GSM1208697_batch1_chrom1_LoVo_UBTF_Mouse_PassedQC.sga LoVo cells|UBTF|PassedQC UBTF GSM1208697
211 GSM1208611_batch1_chrom1_LoVo_USF2_Rabbit_PassedQC.sga LoVo cells|USF2|PassedQC USF2 GSM1208611
212 GSM1208807_batch2_chrom1_LoVo_VEZF1_Rabbit_PassedQC.sga LoVo cells|VEZF1|PassedQC VEZF1 GSM1208807
213 GSM1208698_batch1_chrom1_LoVo_XBP1_Goat_FailedQC.sga LoVo cells|XBP1|FailedQC XBP1 GSM1208698
214 GSM1208699_batch1_chrom1_LoVo_YY1_Mouse_PassedQC.sga LoVo cells|YY1|PassedQC YY1 GSM1208699
215 GSM1208700_batch1_chrom1_LoVo_ZBED4_Rabbit_PassedQC.sga LoVo cells|ZBED4|PassedQC ZBED4 GSM1208700
216 GSM1208701_batch1_chrom1_LoVo_ZBTB17_Mouse_FailedQC.sga LoVo cells|ZBTB17|FailedQC ZBTB17 GSM1208701
217 GSM1208702_batch1_chrom1_LoVo_ZBTB7B_Goat_PassedQC.sga LoVo cells|ZBTB7B|PassedQC ZBTB7B GSM1208702
218 GSM1208675_batch2_chrom1_LoVo_ZFAT_Goat_FailedQC.sga LoVo cells|ZFAT|FailedQC ZFAT GSM1208675
219 GSM1208743_batch2_chrom1_LoVo_ZFHX3_Rabbit_PassedQC.sga LoVo cells|ZFHX3|PassedQC ZFHX3 GSM1208743
220 GSM1208808_batch2_chrom1_LoVo_ZIC2_Goat_FailedQC.sga LoVo cells|ZIC2|FailedQC ZIC2 GSM1208808
221 GSM1208703_batch1_chrom1_LoVo_ZNF236_Rabbit_PassedQC.sga LoVo cells|ZNF236|PassedQC ZNF236 GSM1208703
222 GSM1208704_batch1_chrom1_LoVo_ZNF250_Rabbit_PassedQC.sga LoVo cells|ZNF250|PassedQC ZNF250 GSM1208704
223 GSM1208705_batch1_chrom1_LoVo_ZNF407_Rabbit_PassedQC.sga LoVo cells|ZNF407|PassedQC ZNF407 GSM1208705
224 GSM1208706_batch1_chrom1_LoVo_ZNF706_Rabbit_PassedQC.sga LoVo cells|ZNF706|PassedQC ZNF706 GSM1208706
225 GSM1208707_batch1_chrom1_LoVo_ZZZ3_Goat_FailedQC.sga LoVo cells|ZZZ3|FailedQC ZZZ3 GSM1208707

ChIP-seq peaks files:

Filename Description Feature GEO-ID
1 GSM1208590_batch1_chrom1_LoVo_ARNT_PassedQC_peaks.sga LoVo cells|ARNT_peak|PassedQC ARNT_peak GSM1208590
2 GSM1208591_batch1_chrom1_LoVo_ASCL2_PassedQC_peaks.sga LoVo cells|ASCL2_peak|PassedQC ASCL2_peak GSM1208591
3 GSM1208592_batch1_chrom1_LoVo_ATOH1_PassedQC_peaks.sga LoVo cells|ATOH1_peak|PassedQC ATOH1_peak GSM1208592
4 GSM1208593_batch1_chrom1_LoVo_BARX2_PassedQC_peaks.sga LoVo cells|BARX2_peak|PassedQC BARX2_peak GSM1208593
5 GSM1208594_batch1_chrom1_LoVo_CAMTA2_PassedQC_peaks.sga LoVo cells|CAMTA2_peak|PassedQC CAMTA2_peak GSM1208594
6 GSM1208595_batch1_chrom1_LoVo_CASP8AP2_PassedQC_peaks.sga LoVo cells|CASP8AP2_peak|PassedQC CASP8AP2_peak GSM1208595
7 GSM1208596_batch1_chrom1_LoVo_CASZ1_FailedQC_peaks.sga LoVo cells|CASZ1_peak|FailedQC CASZ1_peak GSM1208596
8 GSM1208597_batch1_chrom1_LoVo_CDX2_FailedQC_peaks.sga LoVo cells|CDX2_peak|FailedQC CDX2_peak GSM1208597
9 GSM1208598_batch1_chrom1_LoVo_CEBPB_PassedQC_peaks.sga LoVo cells|CEBPB_peak|PassedQC CEBPB_peak GSM1208598
10 GSM1208599_batch1_chrom1_LoVo_CEBPG_PassedQC_peaks.sga LoVo cells|CEBPG_peak|PassedQC CEBPG_peak GSM1208599
11 GSM1208600_batch1_chrom1_LoVo_CEBPZ_FailedQC_peaks.sga LoVo cells|CEBPZ_peak|FailedQC CEBPZ_peak GSM1208600
12 GSM1208601_batch1_chrom1_LoVo_CREB3L2_FailedQC_peaks.sga LoVo cells|CREB3L2_peak|FailedQC CREB3L2_peak GSM1208601
13 GSM1208602_batch1_chrom1_LoVo_CSDA_FailedQC_peaks.sga LoVo cells|CSDA_peak|FailedQC CSDA_peak GSM1208602
14 GSM1208603_batch1_chrom1_LoVo_CTCF_PassedQC_peaks.sga LoVo cells|CTCF_peak|PassedQC CTCF_peak GSM1208603
15 GSM1208604_batch1_chrom1_LoVo_CUX1_FailedQC_peaks.sga LoVo cells|CUX1_peak|FailedQC CUX1_peak GSM1208604
16 GSM1208605_batch1_chrom1_LoVo_DBP_PassedQC_peaks.sga LoVo cells|DBP_peak|PassedQC DBP_peak GSM1208605
17 GSM1208606_batch1_chrom1_LoVo_E2F2_PassedQC_peaks.sga LoVo cells|E2F2_peak|PassedQC E2F2_peak GSM1208606
18 GSM1208607_batch1_chrom1_LoVo_E2F4_PassedQC_peaks.sga LoVo cells|E2F4_peak|PassedQC E2F4_peak GSM1208607
19 GSM1208608_batch1_chrom1_LoVo_EGR1_PassedQC_peaks.sga LoVo cells|EGR1_peak|PassedQC EGR1_peak GSM1208608
20 GSM1208609_batch1_chrom1_LoVo_EHF_PassedQC_peaks.sga LoVo cells|EHF_peak|PassedQC EHF_peak GSM1208609
21 GSM1208610_batch1_chrom1_LoVo_ELF1_PassedQC_peaks.sga LoVo cells|ELF1_peak|PassedQC ELF1_peak GSM1208610
22 GSM1208611_batch1_chrom1_LoVo_USF2_PassedQC_peaks.sga LoVo cells|USF2_peak|PassedQC USF2_peak GSM1208611
23 GSM1208612_batch1_chrom1_LoVo_ELF2_FailedQC_peaks.sga LoVo cells|ELF2_peak|FailedQC ELF2_peak GSM1208612
24 GSM1208613_batch1_chrom1_LoVo_EP300_FailedQC_peaks.sga LoVo cells|EP300_peak|FailedQC EP300_peak GSM1208613
25 GSM1208614_batch1_chrom1_LoVo_ERF_FailedQC_peaks.sga LoVo cells|ERF_peak|FailedQC ERF_peak GSM1208614
26 GSM1208615_batch1_chrom1_LoVo_ESRRA_PassedQC_peaks.sga LoVo cells|ESRRA_peak|PassedQC ESRRA_peak GSM1208615
27 GSM1208616_batch1_chrom1_LoVo_ETV4_PassedQC_peaks.sga LoVo cells|ETV4_peak|PassedQC ETV4_peak GSM1208616
28 GSM1208617_batch1_chrom1_LoVo_FOXM1_FailedQC_peaks.sga LoVo cells|FOXM1_peak|FailedQC FOXM1_peak GSM1208617
29 GSM1208618_batch1_chrom1_LoVo_FOXO3_FailedQC_peaks.sga LoVo cells|FOXO3_peak|FailedQC FOXO3_peak GSM1208618
30 GSM1208619_batch1_chrom1_LoVo_GATA2_FailedQC_peaks.sga LoVo cells|GATA2_peak|FailedQC GATA2_peak GSM1208619
31 GSM1208620_batch1_chrom1_LoVo_GATA4_PassedQC_peaks.sga LoVo cells|GATA4_peak|PassedQC GATA4_peak GSM1208620
32 GSM1208621_batch1_chrom1_LoVo_GATA6_PassedQC_peaks.sga LoVo cells|GATA6_peak|PassedQC GATA6_peak GSM1208621
33 GSM1208622_batch1_chrom1_LoVo_GLI2_PassedQC_peaks.sga LoVo cells|GLI2_peak|PassedQC GLI2_peak GSM1208622
34 GSM1208623_batch1_chrom1_LoVo_GLIS2_FailedQC_peaks.sga LoVo cells|GLIS2_peak|FailedQC GLIS2_peak GSM1208623
35 GSM1208624_batch1_chrom1_LoVo_GLIS3_FailedQC_peaks.sga LoVo cells|GLIS3_peak|FailedQC GLIS3_peak GSM1208624
36 GSM1208625_batch1_chrom1_LoVo_GMEB1_PassedQC_peaks.sga LoVo cells|GMEB1_peak|PassedQC GMEB1_peak GSM1208625
37 GSM1208626_batch1_chrom1_LoVo_GMEB2_PassedQC_peaks.sga LoVo cells|GMEB2_peak|PassedQC GMEB2_peak GSM1208626
38 GSM1208627_batch1_chrom1_LoVo_HBP1_PassedQC_peaks.sga LoVo cells|HBP1_peak|PassedQC HBP1_peak GSM1208627
39 GSM1208628_batch1_chrom1_LoVo_HES1_FailedQC_peaks.sga LoVo cells|HES1_peak|FailedQC HES1_peak GSM1208628
40 GSM1208629_batch1_chrom1_LoVo_HES2_PassedQC_peaks.sga LoVo cells|HES2_peak|PassedQC HES2_peak GSM1208629
41 GSM1208630_batch1_chrom1_LoVo_HES4_PassedQC_peaks.sga LoVo cells|HES4_peak|PassedQC HES4_peak GSM1208630
42 GSM1208631_batch1_chrom1_LoVo_HINFP_PassedQC_peaks.sga LoVo cells|HINFP_peak|PassedQC HINFP_peak GSM1208631
43 GSM1208632_batch1_chrom1_LoVo_HNF4A_PassedQC_peaks.sga LoVo cells|HNF4A_peak|PassedQC HNF4A_peak GSM1208632
44 GSM1208633_batch1_chrom1_LoVo_HOXA10_PassedQC_peaks.sga LoVo cells|HOXA10_peak|PassedQC HOXA10_peak GSM1208633
45 GSM1208634_batch1_chrom1_LoVo_HOXA1_PassedQC_peaks.sga LoVo cells|HOXA1_peak|PassedQC HOXA1_peak GSM1208634
46 GSM1208635_batch1_chrom1_LoVo_HOXA7_PassedQC_peaks.sga LoVo cells|HOXA7_peak|PassedQC HOXA7_peak GSM1208635
47 GSM1208636_batch1_chrom1_LoVo_HOXB13_FailedQC_peaks.sga LoVo cells|HOXB13_peak|FailedQC HOXB13_peak GSM1208636
48 GSM1208637_batch1_chrom1_LoVo_HSF2_FailedQC_peaks.sga LoVo cells|HSF2_peak|FailedQC HSF2_peak GSM1208637
49 GSM1208638_batch1_chrom1_LoVo_IRX3_PassedQC_peaks.sga LoVo cells|IRX3_peak|PassedQC IRX3_peak GSM1208638
50 GSM1208639_batch1_chrom1_LoVo_JUN_PassedQC_peaks.sga LoVo cells|JUN_peak|PassedQC JUN_peak GSM1208639
51 GSM1208640_batch1_chrom1_LoVo_KLF10_FailedQC_peaks.sga LoVo cells|KLF10_peak|FailedQC KLF10_peak GSM1208640
52 GSM1208641_batch1_chrom1_LoVo_KLF3_PassedQC_peaks.sga LoVo cells|KLF3_peak|PassedQC KLF3_peak GSM1208641
53 GSM1208642_batch1_chrom1_LoVo_KLF5_PassedQC_peaks.sga LoVo cells|KLF5_peak|PassedQC KLF5_peak GSM1208642
54 GSM1208643_batch1_chrom1_LoVo_LEF1_FailedQC_peaks.sga LoVo cells|LEF1_peak|FailedQC LEF1_peak GSM1208643
55 GSM1208644_batch1_chrom1_LoVo_LHX2_PassedQC_peaks.sga LoVo cells|LHX2_peak|PassedQC LHX2_peak GSM1208644
56 GSM1208645_batch1_chrom1_LoVo_MAX_FailedQC_peaks.sga LoVo cells|MAX_peak|FailedQC MAX_peak GSM1208645
57 GSM1208646_batch1_chrom1_LoVo_MED12_PassedQC_peaks.sga LoVo cells|MED12_peak|PassedQC MED12_peak GSM1208646
58 GSM1208647_batch1_chrom1_LoVo_MED1_PassedQC_peaks.sga LoVo cells|MED1_peak|PassedQC MED1_peak GSM1208647
59 GSM1208648_batch1_chrom1_LoVo_MEF2A_FailedQC_peaks.sga LoVo cells|MEF2A_peak|FailedQC MEF2A_peak GSM1208648
60 GSM1208649_batch1_chrom1_LoVo_MEF2C_PassedQC_peaks.sga LoVo cells|MEF2C_peak|PassedQC MEF2C_peak GSM1208649
61 GSM1208650_batch1_chrom1_LoVo_MEIS2_FailedQC_peaks.sga LoVo cells|MEIS2_peak|FailedQC MEIS2_peak GSM1208650
62 GSM1208651_batch1_chrom1_LoVo_MSX2_FailedQC_peaks.sga LoVo cells|MSX2_peak|FailedQC MSX2_peak GSM1208651
63 GSM1208652_batch1_chrom1_LoVo_MYB_PassedQC_peaks.sga LoVo cells|MYB_peak|PassedQC MYB_peak GSM1208652
64 GSM1208653_batch1_chrom1_LoVo_MYBL2_PassedQC_peaks.sga LoVo cells|MYBL2_peak|PassedQC MYBL2_peak GSM1208653
65 GSM1208654_batch1_chrom1_LoVo_MYC_PassedQC_peaks.sga LoVo cells|MYC_peak|PassedQC MYC_peak GSM1208654
66 GSM1208655_batch1_chrom1_LoVo_MZF1_PassedQC_peaks.sga LoVo cells|MZF1_peak|PassedQC MZF1_peak GSM1208655
67 GSM1208656_batch1_chrom1_LoVo_NEUROG3_PassedQC_peaks.sga LoVo cells|NEUROG3_peak|PassedQC NEUROG3_peak GSM1208656
68 GSM1208657_batch1_chrom1_LoVo_NFAT5_PassedQC_peaks.sga LoVo cells|NFAT5_peak|PassedQC NFAT5_peak GSM1208657
69 GSM1208658_batch1_chrom1_LoVo_NFATC3_FailedQC_peaks.sga LoVo cells|NFATC3_peak|FailedQC NFATC3_peak GSM1208658
70 GSM1208659_batch1_chrom1_LoVo_NFE2L2_PassedQC_peaks.sga LoVo cells|NFE2L2_peak|PassedQC NFE2L2_peak GSM1208659
71 GSM1208660_batch1_chrom1_LoVo_NFIL3_PassedQC_peaks.sga LoVo cells|NFIL3_peak|PassedQC NFIL3_peak GSM1208660
72 GSM1208661_batch1_chrom1_LoVo_NIPBL_PassedQC_peaks.sga LoVo cells|NIPBL_peak|PassedQC NIPBL_peak GSM1208661
73 GSM1208662_batch1_chrom1_LoVo_NPAT_PassedQC_peaks.sga LoVo cells|NPAT_peak|PassedQC NPAT_peak GSM1208662
74 GSM1208663_batch1_chrom1_LoVo_NR1H3_FailedQC_peaks.sga LoVo cells|NR1H3_peak|FailedQC NR1H3_peak GSM1208663
75 GSM1208664_batch1_chrom1_LoVo_NR2F1_PassedQC_peaks.sga LoVo cells|NR2F1_peak|PassedQC NR2F1_peak GSM1208664
76 GSM1208665_batch1_chrom1_LoVo_NR2F2_PassedQC_peaks.sga LoVo cells|NR2F2_peak|PassedQC NR2F2_peak GSM1208665
77 GSM1208666_batch1_chrom1_LoVo_NR3C1_PassedQC_peaks.sga LoVo cells|NR3C1_peak|PassedQC NR3C1_peak GSM1208666
78 GSM1208667_batch1_chrom1_LoVo_PITX1_FailedQC_peaks.sga LoVo cells|PITX1_peak|FailedQC PITX1_peak GSM1208667
79 GSM1208668_batch1_chrom1_LoVo_RAD21_PassedQC_peaks.sga LoVo cells|RAD21_peak|PassedQC RAD21_peak GSM1208668
80 GSM1208669_batch1_chrom1_LoVo_RAX2_FailedQC_peaks.sga LoVo cells|RAX2_peak|FailedQC RAX2_peak GSM1208669
81 GSM1208670_batch1_chrom1_LoVo_RFX1_PassedQC_peaks.sga LoVo cells|RFX1_peak|PassedQC RFX1_peak GSM1208670
82 GSM1208671_batch1_chrom1_LoVo_RFX2_PassedQC_peaks.sga LoVo cells|RFX2_peak|PassedQC RFX2_peak GSM1208671
83 GSM1208672_batch1_chrom1_LoVo_RFX5_PassedQC_peaks.sga LoVo cells|RFX5_peak|PassedQC RFX5_peak GSM1208672
84 GSM1208673_batch1_chrom1_LoVo_RXRA_PassedQC_peaks.sga LoVo cells|RXRA_peak|PassedQC RXRA_peak GSM1208673
85 GSM1208674_batch1_chrom1_LoVo_SMAD2_PassedQC_peaks.sga LoVo cells|SMAD2_peak|PassedQC SMAD2_peak GSM1208674
86 GSM1208675_batch2_chrom1_LoVo_ZFAT_FailedQC_peaks.sga LoVo cells|ZFAT_peak|FailedQC ZFAT_peak GSM1208675
87 GSM1208676_batch1_chrom1_LoVo_SMAD3_PassedQC_peaks.sga LoVo cells|SMAD3_peak|PassedQC SMAD3_peak GSM1208676
88 GSM1208677_batch1_chrom1_LoVo_SMAD4_FailedQC_peaks.sga LoVo cells|SMAD4_peak|FailedQC SMAD4_peak GSM1208677
89 GSM1208678_batch1_chrom1_LoVo_SMC1A_PassedQC_peaks.sga LoVo cells|SMC1A_peak|PassedQC SMC1A_peak GSM1208678
90 GSM1208679_batch1_chrom1_LoVo_SMC3_PassedQC_peaks.sga LoVo cells|SMC3_peak|PassedQC SMC3_peak GSM1208679
91 GSM1208680_batch1_chrom1_LoVo_SNAI1_FailedQC_peaks.sga LoVo cells|SNAI1_peak|FailedQC SNAI1_peak GSM1208680
92 GSM1208681_batch1_chrom1_LoVo_SOX4_PassedQC_peaks.sga LoVo cells|SOX4_peak|PassedQC SOX4_peak GSM1208681
93 GSM1208682_batch1_chrom1_LoVo_SOX9_FailedQC_peaks.sga LoVo cells|SOX9_peak|FailedQC SOX9_peak GSM1208682
94 GSM1208683_batch1_chrom1_LoVo_SP1_PassedQC_peaks.sga LoVo cells|SP1_peak|PassedQC SP1_peak GSM1208683
95 GSM1208684_batch1_chrom1_LoVo_SP3_PassedQC_peaks.sga LoVo cells|SP3_peak|PassedQC SP3_peak GSM1208684
96 GSM1208685_batch1_chrom1_LoVo_SREBF2_FailedQC_peaks.sga LoVo cells|SREBF2_peak|FailedQC SREBF2_peak GSM1208685
97 GSM1208686_batch1_chrom1_LoVo_SRF_FailedQC_peaks.sga LoVo cells|SRF_peak|FailedQC SRF_peak GSM1208686
98 GSM1208687_batch1_chrom1_LoVo_TBX3_PassedQC_peaks.sga LoVo cells|TBX3_peak|PassedQC TBX3_peak GSM1208687
99 GSM1208688_batch1_chrom1_LoVo_TCF12_PassedQC_peaks.sga LoVo cells|TCF12_peak|PassedQC TCF12_peak GSM1208688
100 GSM1208689_batch1_chrom1_LoVo_TCF7L2_PassedQC_peaks.sga LoVo cells|TCF7L2_peak|PassedQC TCF7L2_peak GSM1208689
101 GSM1208690_batch1_chrom1_LoVo_TFAP2A_PassedQC_peaks.sga LoVo cells|TFAP2A_peak|PassedQC TFAP2A_peak GSM1208690
102 GSM1208691_batch1_chrom1_LoVo_TFDP1_PassedQC_peaks.sga LoVo cells|TFDP1_peak|PassedQC TFDP1_peak GSM1208691
103 GSM1208692_batch1_chrom1_LoVo_TFDP2_FailedQC_peaks.sga LoVo cells|TFDP2_peak|FailedQC TFDP2_peak GSM1208692
104 GSM1208693_batch1_chrom1_LoVo_TFE3_FailedQC_peaks.sga LoVo cells|TFE3_peak|FailedQC TFE3_peak GSM1208693
105 GSM1208694_batch1_chrom1_LoVo_TFEB_FailedQC_peaks.sga LoVo cells|TFEB_peak|FailedQC TFEB_peak GSM1208694
106 GSM1208695_batch1_chrom1_LoVo_TGIF1_FailedQC_peaks.sga LoVo cells|TGIF1_peak|FailedQC TGIF1_peak GSM1208695
107 GSM1208696_batch1_chrom1_LoVo_TP53_FailedQC_peaks.sga LoVo cells|TP53_peak|FailedQC TP53_peak GSM1208696
108 GSM1208697_batch1_chrom1_LoVo_UBTF_PassedQC_peaks.sga LoVo cells|UBTF_peak|PassedQC UBTF_peak GSM1208697
109 GSM1208698_batch1_chrom1_LoVo_XBP1_FailedQC_peaks.sga LoVo cells|XBP1_peak|FailedQC XBP1_peak GSM1208698
110 GSM1208699_batch1_chrom1_LoVo_YY1_PassedQC_peaks.sga LoVo cells|YY1_peak|PassedQC YY1_peak GSM1208699
111 GSM1208700_batch1_chrom1_LoVo_ZBED4_PassedQC_peaks.sga LoVo cells|ZBED4_peak|PassedQC ZBED4_peak GSM1208700
112 GSM1208701_batch1_chrom1_LoVo_ZBTB17_FailedQC_peaks.sga LoVo cells|ZBTB17_peak|FailedQC ZBTB17_peak GSM1208701
113 GSM1208702_batch1_chrom1_LoVo_ZBTB7B_PassedQC_peaks.sga LoVo cells|ZBTB7B_peak|PassedQC ZBTB7B_peak GSM1208702
114 GSM1208703_batch1_chrom1_LoVo_ZNF236_PassedQC_peaks.sga LoVo cells|ZNF236_peak|PassedQC ZNF236_peak GSM1208703
115 GSM1208704_batch1_chrom1_LoVo_ZNF250_PassedQC_peaks.sga LoVo cells|ZNF250_peak|PassedQC ZNF250_peak GSM1208704
116 GSM1208705_batch1_chrom1_LoVo_ZNF407_PassedQC_peaks.sga LoVo cells|ZNF407_peak|PassedQC ZNF407_peak GSM1208705
117 GSM1208706_batch1_chrom1_LoVo_ZNF706_PassedQC_peaks.sga LoVo cells|ZNF706_peak|PassedQC ZNF706_peak GSM1208706
118 GSM1208707_batch1_chrom1_LoVo_ZZZ3_FailedQC_peaks.sga LoVo cells|ZZZ3_peak|FailedQC ZZZ3_peak GSM1208707
119 GSM1208708_batch2_chrom1_LoVo_ADNP_FailedQC_peaks.sga LoVo cells|ADNP_peak|FailedQC ADNP_peak GSM1208708
120 GSM1208709_batch2_chrom1_LoVo_AEBP2_PassedQC_peaks.sga LoVo cells|AEBP2_peak|PassedQC AEBP2_peak GSM1208709
121 GSM1208710_batch2_chrom1_LoVo_ALX4_FailedQC_peaks.sga LoVo cells|ALX4_peak|FailedQC ALX4_peak GSM1208710
122 GSM1208711_batch2_chrom1_LoVo_AR_FailedQC_peaks.sga LoVo cells|AR_peak|FailedQC AR_peak GSM1208711
123 GSM1208712_batch2_chrom1_LoVo_ATF1_PassedQC_peaks.sga LoVo cells|ATF1_peak|PassedQC ATF1_peak GSM1208712
124 GSM1208713_batch2_chrom1_LoVo_ATF5_PassedQC_peaks.sga LoVo cells|ATF5_peak|PassedQC ATF5_peak GSM1208713
125 GSM1208714_batch2_chrom1_LoVo_BARHL1_PassedQC_peaks.sga LoVo cells|BARHL1_peak|PassedQC BARHL1_peak GSM1208714
126 GSM1208715_batch2_chrom1_LoVo_BTF3_FailedQC_peaks.sga LoVo cells|BTF3_peak|FailedQC BTF3_peak GSM1208715
127 GSM1208716_batch2_chrom1_LoVo_CBFB_FailedQC_peaks.sga LoVo cells|CBFB_peak|FailedQC CBFB_peak GSM1208716
128 GSM1208717_batch2_chrom1_LoVo_CEBPE_FailedQC_peaks.sga LoVo cells|CEBPE_peak|FailedQC CEBPE_peak GSM1208717
129 GSM1208718_batch2_chrom1_LoVo_CIC_FailedQC_peaks.sga LoVo cells|CIC_peak|FailedQC CIC_peak GSM1208718
130 GSM1208719_batch2_chrom1_LoVo_CLOCK_PassedQC_peaks.sga LoVo cells|CLOCK_peak|PassedQC CLOCK_peak GSM1208719
131 GSM1208720_batch2_chrom1_LoVo_CREB3_FailedQC_peaks.sga LoVo cells|CREB3_peak|FailedQC CREB3_peak GSM1208720
132 GSM1208721_batch2_chrom1_LoVo_CREB3L4_PassedQC_peaks.sga LoVo cells|CREB3L4_peak|PassedQC CREB3L4_peak GSM1208721
133 GSM1208722_batch2_chrom1_LoVo_CREM_FailedQC_peaks.sga LoVo cells|CREM_peak|FailedQC CREM_peak GSM1208722
134 GSM1208723_batch2_chrom1_LoVo_DLX1_PassedQC_peaks.sga LoVo cells|DLX1_peak|PassedQC DLX1_peak GSM1208723
135 GSM1208724_batch2_chrom1_LoVo_DLX2_FailedQC_peaks.sga LoVo cells|DLX2_peak|FailedQC DLX2_peak GSM1208724
136 GSM1208725_batch2_chrom1_LoVo_DLX4_FailedQC_peaks.sga LoVo cells|DLX4_peak|FailedQC DLX4_peak GSM1208725
137 GSM1208726_batch2_chrom1_LoVo_DLX6_FailedQC_peaks.sga LoVo cells|DLX6_peak|FailedQC DLX6_peak GSM1208726
138 GSM1208727_batch2_chrom1_LoVo_DMRT1_FailedQC_peaks.sga LoVo cells|DMRT1_peak|FailedQC DMRT1_peak GSM1208727
139 GSM1208728_batch2_chrom1_LoVo_E2F1_FailedQC_peaks.sga LoVo cells|E2F1_peak|FailedQC E2F1_peak GSM1208728
140 GSM1208729_batch2_chrom1_LoVo_E2F3_PassedQC_peaks.sga LoVo cells|E2F3_peak|PassedQC E2F3_peak GSM1208729
141 GSM1208730_batch2_chrom1_LoVo_E2F7_PassedQC_peaks.sga LoVo cells|E2F7_peak|PassedQC E2F7_peak GSM1208730
142 GSM1208731_batch2_chrom1_LoVo_E2F8_PassedQC_peaks.sga LoVo cells|E2F8_peak|PassedQC E2F8_peak GSM1208731
143 GSM1208732_batch2_chrom1_LoVo_ELF3_FailedQC_peaks.sga LoVo cells|ELF3_peak|FailedQC ELF3_peak GSM1208732
144 GSM1208733_batch2_chrom1_LoVo_EMX1_FailedQC_peaks.sga LoVo cells|EMX1_peak|FailedQC EMX1_peak GSM1208733
145 GSM1208734_batch2_chrom1_LoVo_EOMES_FailedQC_peaks.sga LoVo cells|EOMES_peak|FailedQC EOMES_peak GSM1208734
146 GSM1208735_batch2_chrom1_LoVo_ERG_FailedQC_peaks.sga LoVo cells|ERG_peak|FailedQC ERG_peak GSM1208735
147 GSM1208736_batch2_chrom1_LoVo_ERM_PassedQC_peaks.sga LoVo cells|ERM_peak|PassedQC ERM_peak GSM1208736
148 GSM1208737_batch2_chrom1_LoVo_ESR1_PassedQC_peaks.sga LoVo cells|ESR1_peak|PassedQC ESR1_peak GSM1208737
149 GSM1208738_batch2_chrom1_LoVo_ETS2_PassedQC_peaks.sga LoVo cells|ETS2_peak|PassedQC ETS2_peak GSM1208738
150 GSM1208739_batch2_chrom1_LoVo_ETV7_PassedQC_peaks.sga LoVo cells|ETV7_peak|PassedQC ETV7_peak GSM1208739
151 GSM1208740_batch2_chrom1_LoVo_EVI1_PassedQC_peaks.sga LoVo cells|EVI1_peak|PassedQC EVI1_peak GSM1208740
152 GSM1208741_batch2_chrom1_LoVo_EZH2_FailedQC_peaks.sga LoVo cells|EZH2_peak|FailedQC EZH2_peak GSM1208741
153 GSM1208742_batch2_chrom1_LoVo_FEV_PassedQC_peaks.sga LoVo cells|FEV_peak|PassedQC FEV_peak GSM1208742
154 GSM1208743_batch2_chrom1_LoVo_ZFHX3_PassedQC_peaks.sga LoVo cells|ZFHX3_peak|PassedQC ZFHX3_peak GSM1208743
155 GSM1208744_batch2_chrom1_LoVo_FOXA1_FailedQC_peaks.sga LoVo cells|FOXA1_peak|FailedQC FOXA1_peak GSM1208744
156 GSM1208745_batch2_chrom1_LoVo_FOXD2_PassedQC_peaks.sga LoVo cells|FOXD2_peak|PassedQC FOXD2_peak GSM1208745
157 GSM1208746_batch2_chrom1_LoVo_FOXG1_PassedQC_peaks.sga LoVo cells|FOXG1_peak|PassedQC FOXG1_peak GSM1208746
158 GSM1208747_batch2_chrom1_LoVo_FOXK2_FailedQC_peaks.sga LoVo cells|FOXK2_peak|FailedQC FOXK2_peak GSM1208747
159 GSM1208748_batch2_chrom1_LoVo_FOXP3_FailedQC_peaks.sga LoVo cells|FOXP3_peak|FailedQC FOXP3_peak GSM1208748
160 GSM1208749_batch2_chrom1_LoVo_GATA1_PassedQC_peaks.sga LoVo cells|GATA1_peak|PassedQC GATA1_peak GSM1208749
161 GSM1208750_batch2_chrom1_LoVo_GLI1_FailedQC_peaks.sga LoVo cells|GLI1_peak|FailedQC GLI1_peak GSM1208750
162 GSM1208751_batch2_chrom1_LoVo_GLI3_PassedQC_peaks.sga LoVo cells|GLI3_peak|PassedQC GLI3_peak GSM1208751
163 GSM1208752_batch2_chrom1_LoVo_GLIS1_PassedQC_peaks.sga LoVo cells|GLIS1_peak|PassedQC GLIS1_peak GSM1208752
164 GSM1208753_batch2_chrom1_LoVo_HIF1A_FailedQC_peaks.sga LoVo cells|HIF1A_peak|FailedQC HIF1A_peak GSM1208753
165 GSM1208754_batch2_chrom1_LoVo_HIVEP1_FailedQC_peaks.sga LoVo cells|HIVEP1_peak|FailedQC HIVEP1_peak GSM1208754
166 GSM1208755_batch2_chrom1_LoVo_HMGA1_FailedQC_peaks.sga LoVo cells|HMGA1_peak|FailedQC HMGA1_peak GSM1208755
167 GSM1208756_batch2_chrom1_LoVo_HOXA13_PassedQC_peaks.sga LoVo cells|HOXA13_peak|PassedQC HOXA13_peak GSM1208756
168 GSM1208757_batch2_chrom1_LoVo_HOXA2_PassedQC_peaks.sga LoVo cells|HOXA2_peak|PassedQC HOXA2_peak GSM1208757
169 GSM1208758_batch2_chrom1_LoVo_HOXC6_PassedQC_peaks.sga LoVo cells|HOXC6_peak|PassedQC HOXC6_peak GSM1208758
170 GSM1208759_batch2_chrom1_LoVo_HSF1_FailedQC_peaks.sga LoVo cells|HSF1_peak|FailedQC HSF1_peak GSM1208759
171 GSM1208760_batch2_chrom1_LoVo_HSF4_FailedQC_peaks.sga LoVo cells|HSF4_peak|FailedQC HSF4_peak GSM1208760
172 GSM1208761_batch2_chrom1_LoVo_ISL1_FailedQC_peaks.sga LoVo cells|ISL1_peak|FailedQC ISL1_peak GSM1208761
173 GSM1208762_batch2_chrom1_LoVo_JDP2_FailedQC_peaks.sga LoVo cells|JDP2_peak|FailedQC JDP2_peak GSM1208762
174 GSM1208763_batch2_chrom1_LoVo_JUND_PassedQC_peaks.sga LoVo cells|JUND_peak|PassedQC JUND_peak GSM1208763
175 GSM1208764_batch2_chrom1_LoVo_LHX3_FailedQC_peaks.sga LoVo cells|LHX3_peak|FailedQC LHX3_peak GSM1208764
176 GSM1208765_batch2_chrom1_LoVo_LIN9_FailedQC_peaks.sga LoVo cells|LIN9_peak|FailedQC LIN9_peak GSM1208765
177 GSM1208766_batch2_chrom1_LoVo_LMX1B_FailedQC_peaks.sga LoVo cells|LMX1B_peak|FailedQC LMX1B_peak GSM1208766
178 GSM1208767_batch2_chrom1_LoVo_LYL1_PassedQC_peaks.sga LoVo cells|LYL1_peak|PassedQC LYL1_peak GSM1208767
179 GSM1208768_batch2_chrom1_LoVo_MAZ_PassedQC_peaks.sga LoVo cells|MAZ_peak|PassedQC MAZ_peak GSM1208768
180 GSM1208769_batch2_chrom1_LoVo_MEF2D_FailedQC_peaks.sga LoVo cells|MEF2D_peak|FailedQC MEF2D_peak GSM1208769
181 GSM1208770_batch2_chrom1_LoVo_MEIS3_FailedQC_peaks.sga LoVo cells|MEIS3_peak|FailedQC MEIS3_peak GSM1208770
182 GSM1208771_batch2_chrom1_LoVo_MNT_PassedQC_peaks.sga LoVo cells|MNT_peak|PassedQC MNT_peak GSM1208771
183 GSM1208772_batch2_chrom1_LoVo_MSX1_FailedQC_peaks.sga LoVo cells|MSX1_peak|FailedQC MSX1_peak GSM1208772
184 GSM1208773_batch2_chrom1_LoVo_MXD1_FailedQC_peaks.sga LoVo cells|MXD1_peak|FailedQC MXD1_peak GSM1208773
185 GSM1208774_batch2_chrom1_LoVo_NFATC1_FailedQC_peaks.sga LoVo cells|NFATC1_peak|FailedQC NFATC1_peak GSM1208774
186 GSM1208775_batch2_chrom1_LoVo_NFATC4_FailedQC_peaks.sga LoVo cells|NFATC4_peak|FailedQC NFATC4_peak GSM1208775
187 GSM1208776_batch2_chrom1_LoVo_NFKB2_PassedQC_peaks.sga LoVo cells|NFKB2_peak|PassedQC NFKB2_peak GSM1208776
188 GSM1208777_batch2_chrom1_LoVo_NFYA_PassedQC_peaks.sga LoVo cells|NFYA_peak|PassedQC NFYA_peak GSM1208777
189 GSM1208778_batch2_chrom1_LoVo_NKX2-1_FailedQC_peaks.sga LoVo cells|NKX2-1_peak|FailedQC NKX2-1_peak GSM1208778
190 GSM1208779_batch2_chrom1_LoVo_NKX2-5_FailedQC_peaks.sga LoVo cells|NKX2-5_peak|FailedQC NKX2-5_peak GSM1208779
191 GSM1208780_batch2_chrom1_LoVo_NKX2.2_PassedQC_peaks.sga LoVo cells|NKX2.2_peak|PassedQC NKX2.2_peak GSM1208780
192 GSM1208781_batch2_chrom1_LoVo_NKX3-1_FailedQC_peaks.sga LoVo cells|NKX3-1_peak|FailedQC NKX3-1_peak GSM1208781
193 GSM1208782_batch2_chrom1_LoVo_OTX1_FailedQC_peaks.sga LoVo cells|OTX1_peak|FailedQC OTX1_peak GSM1208782
194 GSM1208783_batch2_chrom1_LoVo_PATZ1_FailedQC_peaks.sga LoVo cells|PATZ1_peak|FailedQC PATZ1_peak GSM1208783
195 GSM1208784_batch2_chrom1_LoVo_PAX2_FailedQC_peaks.sga LoVo cells|PAX2_peak|FailedQC PAX2_peak GSM1208784
196 GSM1208785_batch2_chrom1_LoVo_PDX1_FailedQC_peaks.sga LoVo cells|PDX1_peak|FailedQC PDX1_peak GSM1208785
197 GSM1208786_batch2_chrom1_LoVo_PHF20_FailedQC_peaks.sga LoVo cells|PHF20_peak|FailedQC PHF20_peak GSM1208786
198 GSM1208787_batch2_chrom1_LoVo_RARA_FailedQC_peaks.sga LoVo cells|RARA_peak|FailedQC RARA_peak GSM1208787
199 GSM1208788_batch2_chrom1_LoVo_RARG_PassedQC_peaks.sga LoVo cells|RARG_peak|PassedQC RARG_peak GSM1208788
200 GSM1208789_batch2_chrom1_LoVo_RBCK1_PassedQC_peaks.sga LoVo cells|RBCK1_peak|PassedQC RBCK1_peak GSM1208789
201 GSM1208790_batch2_chrom1_LoVo_REST_PassedQC_peaks.sga LoVo cells|REST_peak|PassedQC REST_peak GSM1208790
202 GSM1208791_batch2_chrom1_LoVo_RORA_FailedQC_peaks.sga LoVo cells|RORA_peak|FailedQC RORA_peak GSM1208791
203 GSM1208792_batch2_chrom1_LoVo_SATB1_FailedQC_peaks.sga LoVo cells|SATB1_peak|FailedQC SATB1_peak GSM1208792
204 GSM1208793_batch2_chrom1_LoVo_SMAD1_FailedQC_peaks.sga LoVo cells|SMAD1_peak|FailedQC SMAD1_peak GSM1208793
205 GSM1208794_batch2_chrom1_LoVo_SOX2_PassedQC_peaks.sga LoVo cells|SOX2_peak|PassedQC SOX2_peak GSM1208794
206 GSM1208795_batch2_chrom1_LoVo_SOX3_FailedQC_peaks.sga LoVo cells|SOX3_peak|FailedQC SOX3_peak GSM1208795
207 GSM1208796_batch2_chrom1_LoVo_SP2_PassedQC_peaks.sga LoVo cells|SP2_peak|PassedQC SP2_peak GSM1208796
208 GSM1208797_batch2_chrom1_LoVo_SPIB_FailedQC_peaks.sga LoVo cells|SPIB_peak|FailedQC SPIB_peak GSM1208797
209 GSM1208798_batch2_chrom1_LoVo_SREBF1_FailedQC_peaks.sga LoVo cells|SREBF1_peak|FailedQC SREBF1_peak GSM1208798
210 GSM1208799_batch2_chrom1_LoVo_STAT3_FailedQC_peaks.sga LoVo cells|STAT3_peak|FailedQC STAT3_peak GSM1208799
211 GSM1208800_batch2_chrom1_LoVo_T_FailedQC_peaks.sga LoVo cells|T_peak|FailedQC T_peak GSM1208800
212 GSM1208801_batch2_chrom1_LoVo_TCF3_FailedQC_peaks.sga LoVo cells|TCF3_peak|FailedQC TCF3_peak GSM1208801
213 GSM1208802_batch2_chrom1_LoVo_TEAD2_PassedQC_peaks.sga LoVo cells|TEAD2_peak|PassedQC TEAD2_peak GSM1208802
214 GSM1208803_batch2_chrom1_LoVo_TEL_FailedQC_peaks.sga LoVo cells|TEL_peak|FailedQC TEL_peak GSM1208803
215 GSM1208804_batch2_chrom1_LoVo_TOX4_FailedQC_peaks.sga LoVo cells|TOX4_peak|FailedQC TOX4_peak GSM1208804
216 GSM1208805_batch2_chrom1_LoVo_TP73_PassedQC_peaks.sga LoVo cells|TP73_peak|PassedQC TP73_peak GSM1208805
217 GSM1208806_batch2_chrom1_LoVo_TRPS1_FailedQC_peaks.sga LoVo cells|TRPS1_peak|FailedQC TRPS1_peak GSM1208806
218 GSM1208807_batch2_chrom1_LoVo_VEZF1_PassedQC_peaks.sga LoVo cells|VEZF1_peak|PassedQC VEZF1_peak GSM1208807
219 GSM1208808_batch2_chrom1_LoVo_ZIC2_FailedQC_peaks.sga LoVo cells|ZIC2_peak|FailedQC ZIC2_peak GSM1208808
220 GSM1208809_batch1_chrom1_LoVo_H3_PassedQC_peaks.sga LoVo cells|H3_peak|PassedQC H3_peak GSM1208809
221 GSM1208810_batch1_chrom1_LoVo_H3K4me1_PassedQC_peaks.sga LoVo cells|H3K4me1_peak|PassedQC H3K4me1_peak GSM1208810
222 GSM1208811_batch1_chrom1_LoVo_H3K4me3_PassedQC_peaks.sga LoVo cells|H3K4me3_peak|PassedQC H3K4me3_peak GSM1208811


Notes on samples nomenclature:

Low quality samples are marked with "FailedQC" term whereas high quality samples are marked with "PassedQC".

Technical Notes

FASTQ files were extracted from SRA files using fastq-dump (SRA toolkit v2.5.0) and mapped to the hg 19 genome using Bowtie v0.12.8. SAM files were then converted into bam using samtools v0.1.14 and to bed using bamToBed v2.12.0 (bedtools).
SGA conversion was carried out using bed2sga.pl (ChIP-Seq v. 1.5.2).
Peak files (mapped on hg18) were converted to BED using in-house software. BED files were lifted over to hg19 assembly using liftOver and converted into SGA files using in-house software.

References

Last update: 26 Apr 2016