EPDnew, the Human Curated Promoter Database.

Description

The Eukaryotic Promoter Database is an annotated non-redundant collection of eukaryotic POL II promoters, for which the transcription start site has been determined experimentally. Access to promoter sequences is provided by pointers to positions in nucleotide sequence entries. The annotation part of an entry includes description of the initiation site mapping data, cross-references to other databases, and bibliographic references. EPD is structured in a way that facilitates dynamic extraction of biologically meaningful promoter subsets for comparative sequence analysis.

Source

Samples

From H. sapiens (Dec 2013 GRCh38/hg38).

Genome Annotation:

Filename Description Feature GEO-ID
1 Hs_EPDnew_005_hg38.sga TSS EPDnew rel 005 TSS -

Technical Notes

FIles are automatically generated during the database build process. More information about the pipeline used can be found in EPD documentation page

References

Last update: 11 Jul 2017