Gencode, TSS for known genes.
TSS collection from Gencode v24
- Raw data was downloaded from: UCSC
- Input file format: TXT
- Download date: 11-7-2017
From H. sapiens (Dec 2013 GRCh38/hg38).
Data was downloaded from the UCSC table browser selecting
all fields of the primary table plus RefSeq ID and
description from a secndary table. Promoters were fitered if
they were not from protein coding genes and if they did not
have a RefSeq ID.
Wright JC, Mudge J, Weisser H, Barzine MP, Gonzalez JM, Brazma A, Choudhary JS, Harrow J
Improving GENCODE reference gene annotation using a high-stringency proteogenomics workflow.
Nat Commun. 2016 Jun 2;7:11778. doi: 10.1038/ncomms11778.