Genomic list of motif instances from the JASPAR_CORE_vertebrate 2014 matrices with a 0.0001 pvalue.

Description

This serie contains list of motif instance generated by scaning the mouse genome using all the PWMs available in the JASPAR CORE vertebrate 2014 collection. The score limit was set to a score corresponding to a pvalue of 0.0001, using genome backgroud frequencies of 0.29, 0.21, 0.21, 0.29 for A, C, G and T respectively.

Source

Samples

From M. musculus (July 2007 NCBI37/mm9).

Sequence-derived:

Filename Description Feature GEO-ID
1 genomic_hit_MA0002.2_RUNX1.sga RUNX1|MA0002.2_RUNX1 RUNX1 -
2 genomic_hit_MA0003.2_TFAP2A.sga TFAP2A|MA0003.2_TFAP2A TFAP2A -
3 genomic_hit_MA0004.1_Arnt.sga Arnt|MA0004.1_Arnt Arnt -
4 genomic_hit_MA0006.1_Arnt.sga Arnt|MA0006.1_Arnt Arnt -
5 genomic_hit_MA0007.2_AR.sga AR|MA0007.2_AR AR -
6 genomic_hit_MA0009.1_T.sga T|MA0009.1_T T -
7 genomic_hit_MA0014.2_PAX5.sga PAX5|MA0014.2_PAX5 PAX5 -
8 genomic_hit_MA0017.1_NR2F1.sga NR2F1|MA0017.1_NR2F1 NR2F1 -
9 genomic_hit_MA0018.2_CREB1.sga CREB1|MA0018.2_CREB1 CREB1 -
10 genomic_hit_MA0019.1_Ddit3.sga Ddit3|MA0019.1_Ddit3 Ddit3 -
11 genomic_hit_MA0024.2_E2F1.sga E2F1|MA0024.2_E2F1 E2F1 -
12 genomic_hit_MA0025.1_NFIL3.sga NFIL3|MA0025.1_NFIL3 NFIL3 -
13 genomic_hit_MA0027.1_En1.sga En1|MA0027.1_En1 En1 -
14 genomic_hit_MA0028.1_ELK1.sga ELK1|MA0028.1_ELK1 ELK1 -
15 genomic_hit_MA0029.1_Mecom.sga Mecom|MA0029.1_Mecom Mecom -
16 genomic_hit_MA0030.1_FOXF2.sga FOXF2|MA0030.1_FOXF2 FOXF2 -
17 genomic_hit_MA0031.1_FOXD1.sga FOXD1|MA0031.1_FOXD1 FOXD1 -
18 genomic_hit_MA0032.1_FOXC1.sga FOXC1|MA0032.1_FOXC1 FOXC1 -
19 genomic_hit_MA0033.1_FOXL1.sga FOXL1|MA0033.1_FOXL1 FOXL1 -
20 genomic_hit_MA0035.3_Gata1.sga Gata1|MA0035.3_Gata1 Gata1 -
21 genomic_hit_MA0036.2_GATA2.sga GATA2|MA0036.2_GATA2 GATA2 -
22 genomic_hit_MA0037.2_GATA3.sga GATA3|MA0037.2_GATA3 GATA3 -
23 genomic_hit_MA0038.1_Gfi1.sga Gfi1|MA0038.1_Gfi1 Gfi1 -
24 genomic_hit_MA0039.2_Klf4.sga Klf4|MA0039.2_Klf4 Klf4 -
25 genomic_hit_MA0040.1_Foxq1.sga Foxq1|MA0040.1_Foxq1 Foxq1 -
26 genomic_hit_MA0041.1_Foxd3.sga Foxd3|MA0041.1_Foxd3 Foxd3 -
27 genomic_hit_MA0042.1_FOXI1.sga FOXI1|MA0042.1_FOXI1 FOXI1 -
28 genomic_hit_MA0043.1_HLF.sga HLF|MA0043.1_HLF HLF -
29 genomic_hit_MA0046.1_HNF1A.sga HNF1A|MA0046.1_HNF1A HNF1A -
30 genomic_hit_MA0047.2_Foxa2.sga Foxa2|MA0047.2_Foxa2 Foxa2 -
31 genomic_hit_MA0048.1_NHLH1.sga NHLH1|MA0048.1_NHLH1 NHLH1 -
32 genomic_hit_MA0050.2_IRF1.sga IRF1|MA0050.2_IRF1 IRF1 -
33 genomic_hit_MA0051.1_IRF2.sga IRF2|MA0051.1_IRF2 IRF2 -
34 genomic_hit_MA0052.2_MEF2A.sga MEF2A|MA0052.2_MEF2A MEF2A -
35 genomic_hit_MA0056.1_MZF1.sga MZF1|MA0056.1_MZF1 MZF1 -
36 genomic_hit_MA0057.1_MZF1.sga MZF1|MA0057.1_MZF1 MZF1 -
37 genomic_hit_MA0058.2_MAX.sga MAX|MA0058.2_MAX MAX -
38 genomic_hit_MA0059.1_MYC.sga MYC|MA0059.1_MYC MYC -
39 genomic_hit_MA0060.2_NFYA.sga NFYA|MA0060.2_NFYA NFYA -
40 genomic_hit_MA0062.2_GABPA.sga GABPA|MA0062.2_GABPA GABPA -
41 genomic_hit_MA0063.1_Nkx2-5.sga Nkx2-5|MA0063.1_Nkx2-5 Nkx2-5 -
42 genomic_hit_MA0065.2_PPARG.sga PPARG|MA0065.2_PPARG PPARG -
43 genomic_hit_MA0066.1_PPARG.sga PPARG|MA0066.1_PPARG PPARG -
44 genomic_hit_MA0067.1_Pax2.sga Pax2|MA0067.1_Pax2 Pax2 -
45 genomic_hit_MA0068.1_Pax4.sga Pax4|MA0068.1_Pax4 Pax4 -
46 genomic_hit_MA0069.1_Pax6.sga Pax6|MA0069.1_Pax6 Pax6 -
47 genomic_hit_MA0070.1_PBX1.sga PBX1|MA0070.1_PBX1 PBX1 -
48 genomic_hit_MA0071.1_RORA.sga RORA|MA0071.1_RORA RORA -
49 genomic_hit_MA0072.1_RORA.sga RORA|MA0072.1_RORA RORA -
50 genomic_hit_MA0073.1_RREB1.sga RREB1|MA0073.1_RREB1 RREB1 -
51 genomic_hit_MA0074.1_RXRA.sga RXRA|MA0074.1_RXRA RXRA -
52 genomic_hit_MA0075.1_Prrx2.sga Prrx2|MA0075.1_Prrx2 Prrx2 -
53 genomic_hit_MA0076.2_ELK4.sga ELK4|MA0076.2_ELK4 ELK4 -
54 genomic_hit_MA0077.1_SOX9.sga SOX9|MA0077.1_SOX9 SOX9 -
55 genomic_hit_MA0078.1_Sox17.sga Sox17|MA0078.1_Sox17 Sox17 -
56 genomic_hit_MA0079.3_SP1.sga SP1|MA0079.3_SP1 SP1 -
57 genomic_hit_MA0080.3_Spi1.sga Spi1|MA0080.3_Spi1 Spi1 -
58 genomic_hit_MA0081.1_SPIB.sga SPIB|MA0081.1_SPIB SPIB -
59 genomic_hit_MA0083.2_SRF.sga SRF|MA0083.2_SRF SRF -
60 genomic_hit_MA0084.1_SRY.sga SRY|MA0084.1_SRY SRY -
61 genomic_hit_MA0087.1_Sox5.sga Sox5|MA0087.1_Sox5 Sox5 -
62 genomic_hit_MA0088.1_znf143.sga znf143|MA0088.1_znf143 znf143 -
63 genomic_hit_MA0089.1_NFE2L1.sga NFE2L1|MA0089.1_NFE2L1 NFE2L1 -
64 genomic_hit_MA0090.1_TEAD1.sga TEAD1|MA0090.1_TEAD1 TEAD1 -
65 genomic_hit_MA0091.1_TAL1.sga TAL1|MA0091.1_TAL1 TAL1 -
66 genomic_hit_MA0092.1_Hand1.sga Hand1|MA0092.1_Hand1 Hand1 -
67 genomic_hit_MA0093.2_USF1.sga USF1|MA0093.2_USF1 USF1 -
68 genomic_hit_MA0095.2_YY1.sga YY1|MA0095.2_YY1 YY1 -
69 genomic_hit_MA0098.2_Ets1.sga Ets1|MA0098.2_Ets1 Ets1 -
70 genomic_hit_MA0099.2_JUN.sga JUN|MA0099.2_JUN JUN -
71 genomic_hit_MA0100.2_Myb.sga Myb|MA0100.2_Myb Myb -
72 genomic_hit_MA0101.1_REL.sga REL|MA0101.1_REL REL -
73 genomic_hit_MA0102.3_CEBPA.sga CEBPA|MA0102.3_CEBPA CEBPA -
74 genomic_hit_MA0103.2_ZEB1.sga ZEB1|MA0103.2_ZEB1 ZEB1 -
75 genomic_hit_MA0104.3_Mycn.sga Mycn|MA0104.3_Mycn Mycn -
76 genomic_hit_MA0105.3_NFKB1.sga NFKB1|MA0105.3_NFKB1 NFKB1 -
77 genomic_hit_MA0106.2_TP53.sga TP53|MA0106.2_TP53 TP53 -
78 genomic_hit_MA0107.1_RELA.sga RELA|MA0107.1_RELA RELA -
79 genomic_hit_MA0108.2_TBP.sga TBP|MA0108.2_TBP TBP -
80 genomic_hit_MA0109.1_Hltf.sga Hltf|MA0109.1_Hltf Hltf -
81 genomic_hit_MA0111.1_Spz1.sga Spz1|MA0111.1_Spz1 Spz1 -
82 genomic_hit_MA0112.2_ESR1.sga ESR1|MA0112.2_ESR1 ESR1 -
83 genomic_hit_MA0113.2_NR3C1.sga NR3C1|MA0113.2_NR3C1 NR3C1 -
84 genomic_hit_MA0114.2_HNF4A.sga HNF4A|MA0114.2_HNF4A HNF4A -
85 genomic_hit_MA0115.1_NR1H2.sga NR1H2|MA0115.1_NR1H2 NR1H2 -
86 genomic_hit_MA0116.1_Zfp423.sga Zfp423|MA0116.1_Zfp423 Zfp423 -
87 genomic_hit_MA0117.1_Mafb.sga Mafb|MA0117.1_Mafb Mafb -
88 genomic_hit_MA0119.1_TLX1.sga TLX1|MA0119.1_TLX1 TLX1 -
89 genomic_hit_MA0122.1_Nkx3-2.sga Nkx3-2|MA0122.1_Nkx3-2 Nkx3-2 -
90 genomic_hit_MA0124.1_NKX3-1.sga NKX3-1|MA0124.1_NKX3-1 NKX3-1 -
91 genomic_hit_MA0125.1_Nobox.sga Nobox|MA0125.1_Nobox Nobox -
92 genomic_hit_MA0130.1_ZNF354C.sga ZNF354C|MA0130.1_ZNF354C ZNF354C -
93 genomic_hit_MA0131.1_HINFP.sga HINFP|MA0131.1_HINFP HINFP -
94 genomic_hit_MA0132.1_Pdx1.sga Pdx1|MA0132.1_Pdx1 Pdx1 -
95 genomic_hit_MA0133.1_BRCA1.sga BRCA1|MA0133.1_BRCA1 BRCA1 -
96 genomic_hit_MA0135.1_Lhx3.sga Lhx3|MA0135.1_Lhx3 Lhx3 -
97 genomic_hit_MA0136.1_ELF5.sga ELF5|MA0136.1_ELF5 ELF5 -
98 genomic_hit_MA0137.3_STAT1.sga STAT1|MA0137.3_STAT1 STAT1 -
99 genomic_hit_MA0138.2_REST.sga REST|MA0138.2_REST REST -
100 genomic_hit_MA0139.1_CTCF.sga CTCF|MA0139.1_CTCF CTCF -
101 genomic_hit_MA0140.2_TAL1.sga TAL1|MA0140.2_TAL1 TAL1 -
102 genomic_hit_MA0141.2_Esrrb.sga Esrrb|MA0141.2_Esrrb Esrrb -
103 genomic_hit_MA0142.1_Pou5f1.sga Pou5f1|MA0142.1_Pou5f1 Pou5f1 -
104 genomic_hit_MA0143.3_Sox2.sga Sox2|MA0143.3_Sox2 Sox2 -
105 genomic_hit_MA0144.2_STAT3.sga STAT3|MA0144.2_STAT3 STAT3 -
106 genomic_hit_MA0145.2_Tcfcp2l1.sga Tcfcp2l1|MA0145.2_Tcfcp2l1 Tcfcp2l1 -
107 genomic_hit_MA0146.2_Zfx.sga Zfx|MA0146.2_Zfx Zfx -
108 genomic_hit_MA0147.2_Myc.sga Myc|MA0147.2_Myc Myc -
109 genomic_hit_MA0148.3_FOXA1.sga FOXA1|MA0148.3_FOXA1 FOXA1 -
110 genomic_hit_MA0149.1_EWSR1-FLI1.sga EWSR1-FLI1|MA0149.1_EWSR1-FLI1 EWSR1-FLI1 -
111 genomic_hit_MA0150.2_Nfe2l2.sga Nfe2l2|MA0150.2_Nfe2l2 Nfe2l2 -
112 genomic_hit_MA0151.1_ARID3A.sga ARID3A|MA0151.1_ARID3A ARID3A -
113 genomic_hit_MA0152.1_NFATC2.sga NFATC2|MA0152.1_NFATC2 NFATC2 -
114 genomic_hit_MA0153.1_HNF1B.sga HNF1B|MA0153.1_HNF1B HNF1B -
115 genomic_hit_MA0154.2_EBF1.sga EBF1|MA0154.2_EBF1 EBF1 -
116 genomic_hit_MA0155.1_INSM1.sga INSM1|MA0155.1_INSM1 INSM1 -
117 genomic_hit_MA0156.1_FEV.sga FEV|MA0156.1_FEV FEV -
118 genomic_hit_MA0157.1_FOXO3.sga FOXO3|MA0157.1_FOXO3 FOXO3 -
119 genomic_hit_MA0158.1_HOXA5.sga HOXA5|MA0158.1_HOXA5 HOXA5 -
120 genomic_hit_MA0159.1_RXR.sga RXR|MA0159.1_RXR RXR -
121 genomic_hit_MA0160.1_NR4A2.sga NR4A2|MA0160.1_NR4A2 NR4A2 -
122 genomic_hit_MA0161.1_NFIC.sga NFIC|MA0161.1_NFIC NFIC -
123 genomic_hit_MA0162.2_EGR1.sga EGR1|MA0162.2_EGR1 EGR1 -
124 genomic_hit_MA0163.1_PLAG1.sga PLAG1|MA0163.1_PLAG1 PLAG1 -
125 genomic_hit_MA0164.1_Nr2e3.sga Nr2e3|MA0164.1_Nr2e3 Nr2e3 -
126 genomic_hit_MA0258.2_ESR2.sga ESR2|MA0258.2_ESR2 ESR2 -
127 genomic_hit_MA0259.1_HIF1A.sga HIF1A|MA0259.1_HIF1A HIF1A -
128 genomic_hit_MA0442.1_SOX10.sga SOX10|MA0442.1_SOX10 SOX10 -
129 genomic_hit_MA0461.1_Atoh1.sga Atoh1|MA0461.1_Atoh1 Atoh1 -
130 genomic_hit_MA0462.1_BATF.sga BATF|MA0462.1_BATF BATF -
131 genomic_hit_MA0463.1_Bcl6.sga Bcl6|MA0463.1_Bcl6 Bcl6 -
132 genomic_hit_MA0464.1_Bhlhe40.sga Bhlhe40|MA0464.1_Bhlhe40 Bhlhe40 -
133 genomic_hit_MA0465.1_CDX2.sga CDX2|MA0465.1_CDX2 CDX2 -
134 genomic_hit_MA0466.1_CEBPB.sga CEBPB|MA0466.1_CEBPB CEBPB -
135 genomic_hit_MA0467.1_Crx.sga Crx|MA0467.1_Crx Crx -
136 genomic_hit_MA0468.1_DUX4.sga DUX4|MA0468.1_DUX4 DUX4 -
137 genomic_hit_MA0469.1_E2F3.sga E2F3|MA0469.1_E2F3 E2F3 -
138 genomic_hit_MA0470.1_E2F4.sga E2F4|MA0470.1_E2F4 E2F4 -
139 genomic_hit_MA0471.1_E2F6.sga E2F6|MA0471.1_E2F6 E2F6 -
140 genomic_hit_MA0472.1_EGR2.sga EGR2|MA0472.1_EGR2 EGR2 -
141 genomic_hit_MA0473.1_ELF1.sga ELF1|MA0473.1_ELF1 ELF1 -
142 genomic_hit_MA0474.1_Erg.sga Erg|MA0474.1_Erg Erg -
143 genomic_hit_MA0475.1_FLI1.sga FLI1|MA0475.1_FLI1 FLI1 -
144 genomic_hit_MA0476.1_FOS.sga FOS|MA0476.1_FOS FOS -
145 genomic_hit_MA0477.1_FOSL1.sga FOSL1|MA0477.1_FOSL1 FOSL1 -
146 genomic_hit_MA0478.1_FOSL2.sga FOSL2|MA0478.1_FOSL2 FOSL2 -
147 genomic_hit_MA0479.1_FOXH1.sga FOXH1|MA0479.1_FOXH1 FOXH1 -
148 genomic_hit_MA0480.1_Foxo1.sga Foxo1|MA0480.1_Foxo1 Foxo1 -
149 genomic_hit_MA0481.1_FOXP1.sga FOXP1|MA0481.1_FOXP1 FOXP1 -
150 genomic_hit_MA0482.1_Gata4.sga Gata4|MA0482.1_Gata4 Gata4 -
151 genomic_hit_MA0483.1_Gfi1b.sga Gfi1b|MA0483.1_Gfi1b Gfi1b -
152 genomic_hit_MA0484.1_HNF4G.sga HNF4G|MA0484.1_HNF4G HNF4G -
153 genomic_hit_MA0485.1_Hoxc9.sga Hoxc9|MA0485.1_Hoxc9 Hoxc9 -
154 genomic_hit_MA0486.1_HSF1.sga HSF1|MA0486.1_HSF1 HSF1 -
155 genomic_hit_MA0488.1_JUN.sga JUN|MA0488.1_JUN JUN -
156 genomic_hit_MA0489.1_JUN.sga JUN|MA0489.1_JUN JUN -
157 genomic_hit_MA0490.1_JUNB.sga JUNB|MA0490.1_JUNB JUNB -
158 genomic_hit_MA0491.1_JUND.sga JUND|MA0491.1_JUND JUND -
159 genomic_hit_MA0492.1_JUND.sga JUND|MA0492.1_JUND JUND -
160 genomic_hit_MA0493.1_Klf1.sga Klf1|MA0493.1_Klf1 Klf1 -
161 genomic_hit_MA0494.1_Nr1h3.sga Nr1h3|MA0494.1_Nr1h3 Nr1h3 -
162 genomic_hit_MA0495.1_MAFF.sga MAFF|MA0495.1_MAFF MAFF -
163 genomic_hit_MA0496.1_MAFK.sga MAFK|MA0496.1_MAFK MAFK -
164 genomic_hit_MA0497.1_MEF2C.sga MEF2C|MA0497.1_MEF2C MEF2C -
165 genomic_hit_MA0498.1_Meis1.sga Meis1|MA0498.1_Meis1 Meis1 -
166 genomic_hit_MA0499.1_Myod1.sga Myod1|MA0499.1_Myod1 Myod1 -
167 genomic_hit_MA0500.1_Myog.sga Myog|MA0500.1_Myog Myog -
168 genomic_hit_MA0501.1_NFE2.sga NFE2|MA0501.1_NFE2 NFE2 -
169 genomic_hit_MA0502.1_NFYB.sga NFYB|MA0502.1_NFYB NFYB -
170 genomic_hit_MA0503.1_Nkx2-5.sga Nkx2-5|MA0503.1_Nkx2-5 Nkx2-5 -
171 genomic_hit_MA0504.1_NR2C2.sga NR2C2|MA0504.1_NR2C2 NR2C2 -
172 genomic_hit_MA0505.1_Nr5a2.sga Nr5a2|MA0505.1_Nr5a2 Nr5a2 -
173 genomic_hit_MA0506.1_NRF1.sga NRF1|MA0506.1_NRF1 NRF1 -
174 genomic_hit_MA0507.1_POU2F2.sga POU2F2|MA0507.1_POU2F2 POU2F2 -
175 genomic_hit_MA0508.1_PRDM1.sga PRDM1|MA0508.1_PRDM1 PRDM1 -
176 genomic_hit_MA0509.1_Rfx1.sga Rfx1|MA0509.1_Rfx1 Rfx1 -
177 genomic_hit_MA0510.1_RFX5.sga RFX5|MA0510.1_RFX5 RFX5 -
178 genomic_hit_MA0511.1_RUNX2.sga RUNX2|MA0511.1_RUNX2 RUNX2 -
179 genomic_hit_MA0512.1_Rxra.sga Rxra|MA0512.1_Rxra Rxra -
180 genomic_hit_MA0513.1_SMAD2.sga SMAD2|MA0513.1_SMAD2 SMAD2 -
181 genomic_hit_MA0514.1_Sox3.sga Sox3|MA0514.1_Sox3 Sox3 -
182 genomic_hit_MA0515.1_Sox6.sga Sox6|MA0515.1_Sox6 Sox6 -
183 genomic_hit_MA0516.1_SP2.sga SP2|MA0516.1_SP2 SP2 -
184 genomic_hit_MA0517.1_STAT2.sga STAT2|MA0517.1_STAT2 STAT2 -
185 genomic_hit_MA0518.1_Stat4.sga Stat4|MA0518.1_Stat4 Stat4 -
186 genomic_hit_MA0519.1_Stat5a.sga Stat5a|MA0519.1_Stat5a Stat5a -
187 genomic_hit_MA0520.1_Stat6.sga Stat6|MA0520.1_Stat6 Stat6 -
188 genomic_hit_MA0521.1_Tcf12.sga Tcf12|MA0521.1_Tcf12 Tcf12 -
189 genomic_hit_MA0522.1_Tcf3.sga Tcf3|MA0522.1_Tcf3 Tcf3 -
190 genomic_hit_MA0523.1_TCF7L2.sga TCF7L2|MA0523.1_TCF7L2 TCF7L2 -
191 genomic_hit_MA0524.1_TFAP2C.sga TFAP2C|MA0524.1_TFAP2C TFAP2C -
192 genomic_hit_MA0525.1_TP63.sga TP63|MA0525.1_TP63 TP63 -
193 genomic_hit_MA0526.1_USF2.sga USF2|MA0526.1_USF2 USF2 -
194 genomic_hit_MA0527.1_ZBTB33.sga ZBTB33|MA0527.1_ZBTB33 ZBTB33 -
195 genomic_hit_MA0528.1_ZNF263.sga ZNF263|MA0528.1_ZNF263 ZNF263 -
196 genomic_hit_MA0591.1_Bach1.sga Bach1|MA0591.1_Bach1 Bach1 -
197 genomic_hit_MA0592.1_ESRRA.sga ESRRA|MA0592.1_ESRRA ESRRA -
198 genomic_hit_MA0593.1_FOXP2.sga FOXP2|MA0593.1_FOXP2 FOXP2 -
199 genomic_hit_MA0594.1_Hoxa9.sga Hoxa9|MA0594.1_Hoxa9 Hoxa9 -
200 genomic_hit_MA0595.1_SREBF1.sga SREBF1|MA0595.1_SREBF1 SREBF1 -
201 genomic_hit_MA0596.1_SREBF2.sga SREBF2|MA0596.1_SREBF2 SREBF2 -
202 genomic_hit_MA0597.1_THAP1.sga THAP1|MA0597.1_THAP1 THAP1 -
203 genomic_hit_MA0598.1_EHF.sga EHF|MA0598.1_EHF EHF -
204 genomic_hit_MA0599.1_KLF5.sga KLF5|MA0599.1_KLF5 KLF5 -
205 genomic_hit_MA0600.1_RFX2.sga RFX2|MA0600.1_RFX2 RFX2 -

Notes on samples nomenclature:

The sample description is composed of the PWM ID as reported in the original collection together with the factor name.

Technical Notes

mm9 genome assembly was scanned with each log-odd PWM independently using PWMScan using a pvalue threshold of 0.0001 and background frequencies of 0.29,0.21,0.21,0.29 for A,C,G,T respectively. Motif instance coordinates were then converted to sga format by considering the middle position of each hit as the motif coordinate.

References

Last update: 09 June 2017