Asp 2011, The chromatin landscape of muscle differentiation

Description

Data downloaded from GEO series GSE25308: chromatin landscape during muscle differentiation by mapping the genome-wide location of ten key histone marks and transcription factors in mouse myoblasts (MB) and terminally differentiated myotubes (MT).

Samples

From Mouse Jul. 2007 (NCBI37/mm9) Assembly

Filename Description Feature GEO-ID
1 GSM721286_MB_PolII.sga MB PolII PolII GSM721286
2 GSM721287_MT_PolII.sga MT PolII PolII GSM721287
3 GSM721288_MB_H3K4me1.sga MB H3K4me1 H3K4me1 GSM721288
4 GSM721289_MT_H3K4me1.sga MT H3K4me1 H3K4me1 GSM721289
5 GSM721290_MB_H3K4me2.sga MB H3K4me2 H3K4me2 GSM721290
6 GSM721291_MT_H3K4me2.sga MT H3K4me2 H3K4me2 GSM721291
7 GSM721292_MB_H3K4me3.sga MB H3K4me3 H3K4me3 GSM721292
8 GSM721293_MT_H3K4me3.sga MT H3K4me3 H3K4me3 GSM721293
9 GSM721294_MB_H3K27me3.sga MB H3K27me3 H3K27me3 GSM721294
10 GSM721295_MT_H3K27me3.sga MT H3K27me3 H3K27me3 GSM721295
11 GSM721296_MB_H3K36me3.sga MB H3K36me3 H3K36me3 GSM721296
12 GSM721297_MT_H3K36me3.sga MT H3K36me3 H3K36me3 GSM721297
13 GSM721300_MB_H3K9Ac.sga MB H3K9Ac H3K9Ac GSM721300
14 GSM721301_MT_H3K9Ac.sga MT H3K9Ac H3K9Ac GSM721301
15 GSM721302_MB_H3K18Ac.sga MB H3K18Ac H3K18Ac GSM721302
16 GSM721303_MT_H3K18Ac.sga MT H3K18Ac H3K18Ac GSM721303
17 GSM721304_MB_H4K12Ac.sga MB H4K12Ac H4K12Ac GSM721304
18 GSM721305_MT_H4K12Ac.sga MT H4K12Ac H4K12Ac GSM721305
19 GSM721306_MB_sonicated.sga MB input sonicated sonicated GSM721306
20 GSM721307_MT_sonicated.sga MT input sonicated sonicated GSM721307
21 GSM721308_MB_MNAse.sga MB input MNAse MNAse GSM721308
22 GSM721309_MT_MNAse.sga MT input MNAse MNAse GSM721309

Technical Notes

TXT files were downloaded from GEO. They contained the genome coordinates of mapped tags separated into 3 fields: Chromosome name, Chromosome position and Strand. Tags that mapped to the same genomic location were merged ito a single line. They were converted in SGA format using inhouse software.

References

  1. Asp P, Blum R, Vethantham V, Parisi F et al.
    Genome-wide remodeling of the epigenetic landscape during myogenic differentiation.Proc Natl Acad Sci U S A 2011 May 31; 108 (22): E149-58. PMID: 21551099
  2. GEO series GSE25308 Genome-wide remodeling of the epigenetic landscape during myogenic differentiation

Genome browser viewable files

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