Ridinger 2012, Spi-1/PU.1 DNA occupancy in erythroleukemia

Description

Genome wide analysis of Spi-1 binding sites in spleen-derived Spi-1-transgenic erythroleukemic cells (strain: DBA2J) and spleen from Spi-1-transgenic mice with erythroleukemia in vivo (strain: DBA2J; marked as inVivo samples).

Source

Data available at: http://www.ncbi.nlm.nih.gov/geo/query/acc.cgi?acc=GSE33611

Input file format: BED

Samples

From Mouse Jul. 2007 (NCBI37/mm9) Assembly

Filename Description Feature GEO-ID
1 GSM831045_Spi1.sga Spi-1 Spi1 GSM831045
2 GSM912524_Spi1_inVivo.sga Spi-1 inVivo Spi1 GSM912524
3 GSM831046_PolII.sga PolII PolII GSM831046
4 GSM831047_H3K36me3.sga H3K36me3 H3K36me3 GSM831047
5 GSM831048_Input.sga Input Input GSM831048
6 GSM831049_IgG.sga IgG IgG GSM831049
7 GSM912525_Input_inVivo.sga Input inVivo Input GSM912525
8 GSM831045_Spi1_peaks.sga Spi-1 peaks Spi1 GSM831045
9 GSM912524_Spi1_inVivo_peaks.sga Spi-1 inVivo peaks Spi1 GSM912524
10 GSM831046_PolII_peaks.sga PolII peaks PolII GSM831046
11 GSM831047_H3K36me3_peaks.sga H3K36me3 peaks H3K36me3 GSM831047

Technical Notes

BED files were directly converted into SGA files using in-house software

References

  1. Ridinger-Saison M, Boeva V, Rimmelé P, Kulakovskiy I et al. Spi-1/PU.1 activates transcription through clustered DNA occupancy in erythroleukemia. Nucleic Acids Res 2012 Oct;40(18):8927-41. PMID: 22790984
  2. GEO series GSE33611 Spi-1/PU.1 activates transcription through clustered DNA occupancy in erythroleukemia

Genome browser viewable files

None