Young 2011, ChIP-seq analysis of H3K27me3 and PolII in 2 cell lines.

Description

ChIP-seq against H3K27me3 and, RNApol-II in mouse embryonic stem (ES) cells and haemopoietic cell line (G1ME). As a control, whole cell extract (WCE/input) was also sequenced for both cell types without the inclusion of an antibody.

Source

Samples

From M. musculus (July 2007 NCBI37/mm9).

ChIP-seq data:

Filename Description Feature GEO-ID
1 GSM691591_ES_H3K27me3.sga ES H3K27me3 H3K27me3 GSM691591
2 GSM691592_ES_PolII.sga ES RNApol-II PolII GSM691592
3 GSM691593_ES_none.sga ES WCE none GSM691593
4 GSM691594_H3K27me3.sga G1ME H3K27me3 H3K27me3 GSM691594
5 GSM691595_PolII.sga G1ME RNApol-II PolII GSM691595
6 GSM691596_G1ME_none.sga G1ME WCE none GSM691596

Technical Notes

BAM files were converted into BED using bamToBed v2.12.0 (bedtools). SGA conversion was carried out using bed2sga.pl (ChIP-Seq v. 1.5.2).

References

Last update: 28 Feb 2017