TSS annotation from PomBase

Description

Transcription start sites (TSS) and CDS start sites annotations derived from PomBase.

Source

Files downloaded from FTP site: ftp://ftp.ebi.ac.uk/pub/databases/pombase/pombe/
Input file format: GenBank, TXT

Samples

From Pombe 2004 (spo2) Assembly

Filename Description Feature GEO-ID
1 pombaseTssAnnotation.sga Transcription Start Sites TSS -
2 pombaseCdsAnnotation.sga CDS Start Sites TSS -

Technical Notes

GenBank-formatted annotation file (version ASM294v2.26) were downloaded from PomBase FTP and converted to SGA file format for protein coding genes using in-house software.

References

Wood V, Harris MA, McDowall MD, Rutherford K, Vaughan BW, Staines DM, Aslett M, Lock A, Bähler J, Kersey PJ, Oliver SG. PomBase: a comprehensive online resource for fission yeast. Nucleic Acids Res. 2012 Jan;40(Database issue):D695-9. Epub 2011 Oct 28. PubMed PMID: 22039153

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