PWMTools

PWMScore - Score a genomic sequence set in FASTA format with a PWM Model

Input Data Sets
Upload Sequence Set in Fasta Format
      from a FILE
     
      or from a URL:
     

Weight Matrix
PWMs from Library     
        Motif Library:  
        Motif :  
Custom Weight Matrix
Matrix Format
                     

Paste Matrix (JASPAR, TRANSFAC, PFM, LPM, SSA or plain-text PWM)
                     
                     

Or Upload (text File containing the matrix)
                      from a FILE :
                     
                      or from a URL:
                     

Options for Binding Prediction Method
Odds-ratio mode: Uniform bg   Seq Library bg   Sequence-based bg

     

plus
Background


Last update February 2017