PWMScore - Score a genomic sequence set in FASTA format with a PWM Model

Input Data Sets
Upload Sequence Set in Fasta Format
      from a FILE
      or from a URL:

Weight Matrix
PWMs from miscellaneous Libraries     
        Motif Library:  
        Motif :  
PWMs from CIS-BP Libraries     
        Motif Library:  
        Motif :  
Custom Weight Matrix
          Matrix Format

Paste Matrix

Or Upload (text File containing the matrix)
                      from a FILE :
                      or from a URL:

Options for Binding Prediction Method
Sum occupancy score
  Best match scoring
  Background composition normalization
Uniform bg   Seq Library bg   Sequence-based bg
  Search Strand



Last update March 2018