PWMTools

PWMScore - Score a genomic sequence set in FASTA format with a PWM Model

Input Data Sets
Upload Sequence Set in Fasta Format
      from a FILE
     
      or from a URL:
     

Weight Matrix
PWMs from Library     
        Motif Library:  
        Motif :  
Custom Weight Matrix
Matrix Format
                     

Paste Matrix
                     
                     

Or Upload (text File containing the matrix)
                      from a FILE :
                     
                      or from a URL:
                     

Options for Binding Prediction Method
Odds-ratio mode (bg composition-based normalization)
Uniform bg   Seq Library bg   Sequence-based bg
  Best match scoring (compute single best match score)

     

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Background


Last update February 2017