Computational Cancer Genomics | ExPASy | EPFL | Home Page
Due to maintenance activity, PWMTools might not be fully operational these days. Please contact us in case of problems.

PWMScore - Score a genomic sequence set in FASTA format with a PWM Model

Input Data Sets
Upload Sequence Set in Fasta Format
      from a FILE
      or from a URL:

Weight Matrix
PWMs from Library     
        Motif Library:  
        Motif :  
Custom Weight Matrix
Matrix Format

Paste Matrix

Or Upload (text File containing the matrix)
                      from a FILE :
                      or from a URL:

Options for Binding Prediction Method
Odds-ratio mode (bg composition-based normalization)
Uniform bg   Seq Library bg   Sequence-based bg
  Best match scoring (compute single best match score)



Last update October 2017