SSA

Cpr

Generation of a Constraint Profile

SSA Input Data
Select available Data Sets
         Genome :   
         Data Type :   
         Series :   
         Sample :   

Sequence input via server-resident FPS file(s)
        Name(s) of FPS file(s) (up to four):

Upload Sequence Set in Fasta Format


Internal position of functional site :

Functional Position Set (FPS) name :

FPS type (e.g. TSS) :

Upload custom Data
     
      from a FILE (gzip or zip formats are also accepted):
     
      or from a URL:
     
      Experiment :
      Feature  :
 Genomes
Sequence Range
Entire sequence range (for uploaded sequences only)

5' border:       3' border:
Sliding window parameters
Window size :       Window shift :
Shuffling sequences
Region size   :         
Signal Collection
Complete :
# of bases
Random :
# of bases
# of signals
# random number seed (from 0. to 1.)
Special:
# of bases
# total length
Title (max. 10 characters) :
List signal types in text area below.
Min. # of matches:
(optional, reasonable default value supplied by program)
Retrieve graph in :
Color    Greyscale

 

    

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Background

Last update February 2017