RSA-tools - compare-matrices result

Analysis: result (11/01/2013 11:10)

Command: compare-matrices -v 1 -mode matches -format1 transfac -file1 $RSAT/public_html/tmp/wwwrun/2013/01/11/peak-motifs.2013-01-11.110705_2013-01-11.110705_PdhmNx/results/discovered_motifs/oligos_7nt_mkv4_m2/peak-motifs_oligos_7nt_mkv4_m2.tf -format2 tf -file2 $RSAT/public_html/data/motif_databases/JASPAR/jaspar_core_vertebrates_2009_10.tf -mode matches -DR -uth offset_rank 1 -lth w 5 -lth Wr 0.3 -lth cor 0.75 -lth Ncor 0.4 -return matrix_name,matrix_id,cor,Ncor,logoDP,NIcor,NsEucl,SSD,NSW,match_rank,width,strand,offset,consensus,alignments_1ton -sort Ncor -o $RSAT/public_html/tmp/wwwrun/2013/01/11/peak-motifs.2013-01-11.110705_2013-01-11.110705_PdhmNx/results/discovered_motifs/oligos_7nt_mkv4_m2/peak-motifs_oligos_7nt_mkv4_m2_vs_db_jaspar_core_vertebrates

Output files

TypeFile
match_table_txtpeak-motifs_oligos_7nt_mkv4_m2_vs_db_jaspar_core_vertebrates.tab
match_table_htmlpeak-motifs_oligos_7nt_mkv4_m2_vs_db_jaspar_core_vertebrates.html
alignments_1tonpeak-motifs_oligos_7nt_mkv4_m2_vs_db_jaspar_core_vertebrates_alignments_1ton.tab
alignments_1ton_htmlpeak-motifs_oligos_7nt_mkv4_m2_vs_db_jaspar_core_vertebrates_alignments_1ton.html

Directories

TypeDirectory
output.
logospeak-motifs_oligos_7nt_mkv4_m2_vs_db_jaspar_core_vertebrates_aligned_logos