; position-analysis -v 1 -i $RSAT/public_html/tmp/wwwrun/2013/01/11/peak-motifs.2013-01-11.110705_2013-01-11.110705_PdhmNx/data/sequences/peak-motifs_test_purged_ml30_mis0.fasta -format fasta -sort -return chi,sig,distrib,graphs,rank -max_graphs 20 -1str -ovlp -seqtype dna -l 1 -ci 20 -img_format png -title STAT1_motif_Analysis -origin center -o $RSAT/public_html/tmp/wwwrun/2013/01/11/peak-motifs.2013-01-11.110705_2013-01-11.110705_PdhmNx/results/composition/peak-motifs_test_profiles-1str-ovlp_1nt_ci20.tab ; Citation: van Helden, et al. (2000). Nucleic Acids Res 28, 1000-1010. ; Sequence file /home/rsat/rsa-tools/public_html/tmp/wwwrun/2013/01/11/peak-motifs.2013-01-11.110705_2013-01-11.110705_PdhmNx/data/sequences/peak-motifs_test_purged_ml30_mis0.fasta ; Sequence format fasta ; Sequence type dna ; Output file /home/rsat/rsa-tools/public_html/tmp/wwwrun/2013/01/11/peak-motifs.2013-01-11.110705_2013-01-11.110705_PdhmNx/results/composition/peak-motifs_test_profiles-1str-ovlp_1nt_ci20.tab ; Oligo length 1 ; Occurrences counted on a single strands ; Sequence statistics: ; Nb of sequences 2400 ; Sum of sequence lengths 482400 ; Min sequence length 0 ; Max sequence length 201 ; Average sequence length 201 ; Possible positions 482400 ; Oligonucleotide statistics: ; Total occurrences 481037 ; Class parameters: ; Class interval 20 ; Number of classes 11 ; Total positions 482400 ; Degrees of freedom 10 ; Sequences per class: ; class [min max] mid seq occ ; 1 [-119 -100] -109.5 2400 2400 ; 2 [-99 -80] -89.5 2400 48000 ; 3 [-79 -60] -69.5 2400 48000 ; 4 [-59 -40] -49.5 2400 48000 ; 5 [-39 -20] -29.5 2400 48000 ; 6 [-19 0] -9.5 2400 48000 ; 7 [1 20] 10.5 2400 48000 ; 8 [21 40] 30.5 2400 48000 ; 9 [41 60] 50.5 2400 48000 ; 10 [61 80] 70.5 2400 48000 ; 11 [81 100] 90.5 2400 48000 ; ; column headers ; 1 seq pattern sequence ; 2 id pattern identifier ; 3 occ pattern occurrences ; 4 chi2 observed chi-square ; 5 df degrees of freedom ; 6 Pval P-value (probability for one word to be a false positive) ; 7 Eval E-value; expected number of false positives (Eval = Pval * nb_tests) ; 8 sig Significance (sig = -log10(Eval)) ; 9 rank rank of the pattern according to sorting criterion ; 10 -109.5 observed class occurrences ; 11 -89.5 observed class occurrences ; 12 -69.5 observed class occurrences ; 13 -49.5 observed class occurrences ; 14 -29.5 observed class occurrences ; 15 -9.5 observed class occurrences ; 16 10.5 observed class occurrences ; 17 30.5 observed class occurrences ; 18 50.5 observed class occurrences ; 19 70.5 observed class occurrences ; 20 90.5 observed class occurrences #seq id occ chi2 df Pval Eval sig rank -109.5 -89.5 -69.5 -49.5 -29.5 -9.5 10.5 30.5 50.5 70.5 90.5 t t 122702 22.3 10 1.4e-02 0.055 1.26 1 572 12119 12069 12078 12197 12502 12184 12223 12017 12266 12475 c c 118107 17.3 10 6.8e-02 0.27 0.57 2 653 11726 11831 11935 11851 11656 11552 11761 11811 11671 11660 a a 122325 16.2 10 9.4e-02 0.38 0.42 3 627 12300 12168 11999 12078 12070 12465 12073 12249 12043 12253 g g 117903 15.5 10 1.1e-01 0.45 0.34 4 545 11775 11808 11778 11627 11557 11634 11808 11845 11945 11581 ; Host name rsat ; Job started 2013-01-11.110708 ; Job done 2013-01-11.110714 ; Seconds 5.74 ; user 5.74 ; system 0 ; cuser 0.42 ; csystem 0.03