; pattern-assembly -v 1 -i $RSAT/public_html/tmp/wwwrun/2013/01/11/peak-motifs.2013-01-11.110705_2013-01-11.110705_PdhmNx/results/oligos_7nt_mkv4/peak-motifs_oligos-2str-noov_7nt_mkv4.tab -2str -maxfl 1 -subst 1 -toppat 50 -max_asmb_size 50 -max_asmb_nb 3 -o $RSAT/public_html/tmp/wwwrun/2013/01/11/peak-motifs.2013-01-11.110705_2013-01-11.110705_PdhmNx/results/oligos_7nt_mkv4/peak-motifs_oligos-2str-noov_7nt_mkv4_pssm.asmb ; Input file /home/rsat/rsa-tools/public_html/tmp/wwwrun/2013/01/11/peak-motifs.2013-01-11.110705_2013-01-11.110705_PdhmNx/results/oligos_7nt_mkv4/peak-motifs_oligos-2str-noov_7nt_mkv4.tab ; Output file /home/rsat/rsa-tools/public_html/tmp/wwwrun/2013/01/11/peak-motifs.2013-01-11.110705_2013-01-11.110705_PdhmNx/results/oligos_7nt_mkv4/peak-motifs_oligos-2str-noov_7nt_mkv4_pssm.asmb ; Input score column 8 ; Output score column 0 ; two strand assembly ; max flanking bases 1 ; max substitutions 1 ; max assembly size 50 ; top number of patterns 50 ; number of input patterns 50 ; ;assembly # 1 seed: tccagga 18 words length ; alignt rev_cpl score ttcccag... ...ctgggaa 18.46 tttccag... ...ctggaaa 4.01 .ttccagg.. ..cctggaa. 47.26 .ttcctgg.. ..ccaggaa. 37.39 .ttcccgg.. ..ccgggaa. 30.72 .ttccggg.. ..cccggaa. 24.48 .ttacagg.. ..cctgtaa. 6.30 ..tcctgga. .tccagga.. 84.09 ..tccagga. .tcctgga.. 84.09 ..tccggga. .tcccgga.. 41.59 ..tcccgga. .tccggga.. 41.59 ..tacagga. .tcctgta.. 12.58 ..tccagta. .tactgga.. 6.73 ..tccaaga. .tcttgga.. 4.75 ...cctggaa ttccagg... 47.26 ...ccaggaa ttcctgg... 37.39 ...ccgggaa ttcccgg... 30.72 ...cccggaa ttccggg... 24.48 tttccaggaa ttcctggaaa 84.09 best consensus ;assembly # 2 seed: tgactca 11 words length 10 ; alignt rev_cpl score atgagtc.. ..gactcat 10.99 atgactc.. ..gagtcat 7.32 gtgactc.. ..gagtcac 3.06 .tgagtca. .tgactca. 73.43 .tgactca. .tgagtca. 73.43 .tgattca. .tgaatca. 12.05 .tgaatca. .tgattca. 12.05 .tgactaa. .ttagtca. 6.21 ..gactcat atgagtc.. 10.99 ..gagtcat atgactc.. 7.32 ..gactaat attagtc.. 3.50 atgactcat atgagtcat 73.43 best consensus ;assembly # 3 seed: cccagaa 8 words length 9 ; alignt rev_cpl score ttcccgg.. ..ccgggaa 30.72 ttcccag.. ..ctgggaa 18.46 tttccag.. ..ctggaaa 4.01 .tcccgga. .tccggga. 41.59 .tcccaga. .tctggga. 39.35 .tccaaga. .tcttgga. 4.75 ..cccagaa ttctggg.. 39.43 ..cccggaa ttccggg.. 24.48 ttcccagaa ttctgggaa 41.59 best consensus ; Maximal number of assemblies is reached (3). Remaining patterns: 28. ; Host name rsat ; Job started 2013-01-11.110728 ; Job done 2013-01-11.110732 ; Seconds 4.02 ; user 4.02 ; system 0 ; cuser 0 ; csystem 0