; convert-matrix -v 1 -i $RSAT/public_html/tmp/wwwrun/2013/01/11/peak-motifs.2013-01-11.110705_2013-01-11.110705_PdhmNx/results/oligos_7nt_mkv4/peak-motifs_oligos-2str-noov_7nt_mkv4_pssm_count_matrices.tf -from transfac -to tab -return counts -o $RSAT/public_html/tmp/wwwrun/2013/01/11/peak-motifs.2013-01-11.110705_2013-01-11.110705_PdhmNx/results/oligos_7nt_mkv4/peak-motifs_oligos-2str-noov_7nt_mkv4_pssm_count_matrices.txt
; Input files
; input /home/rsat/rsa-tools/public_html/tmp/wwwrun/2013/01/11/peak-motifs.2013-01-11.110705_2013-01-11.110705_PdhmNx/results/oligos_7nt_mkv4/peak-motifs_oligos-2str-noov_7nt_mkv4_pssm_count_matrices.tf
; Input format transfac
; Output files
; output /home/rsat/rsa-tools/public_html/tmp/wwwrun/2013/01/11/peak-motifs.2013-01-11.110705_2013-01-11.110705_PdhmNx/results/oligos_7nt_mkv4/peak-motifs_oligos-2str-noov_7nt_mkv4_pssm_count_matrices.txt
; Output format tab
; pseudo-weight 1
a 237 426 84 1 1 178 0 456 265 0 1319 1318 550 257
c 455 268 57 1 40 1142 1320 266 1 0 0 2 202 358
g 349 370 74 0 0 0 0 176 1054 1138 0 0 315 228
t 279 256 1105 1318 1279 0 0 422 0 182 1 0 253 477
//
a 169 181 354 0 0 602 45 0 87 602 16 139 146
c 139 111 41 0 0 1 263 0 516 0 63 133 174
g 162 146 192 0 603 0 243 1 0 1 41 148 115
t 133 165 16 603 0 0 52 602 0 0 483 183 168
//
a 381 217 0 4 8 1 597 450 1 1213 1217 492 233
c 271 347 0 0 1168 1214 612 1 0 3 2 185 354
g 337 158 3 1 0 4 10 768 1195 0 0 333 244
t 230 497 1216 1214 43 0 0 0 23 3 0 209 388
//
; Host name rsat
; Job started 2013-01-11.110736
; Job done 2013-01-11.110736
; Seconds 0.15
; user 0.15
; system 0
; cuser 0
; csystem 0