UCSC, TSS and other annotations for known genes.

Description

Transcription start sites inferred form KnownGenes track from UCSC Genome Browser.

Source

Samples

From D. rerio (July 2010 Zv9/danRer7).

Genome Annotation:

Filename Description Feature GEO-ID
1 ucsc_promoter_list.sga TSS from UCSC known genes TSS -
2 ucsc_CDSstart_list.sga CDS start sites CDS_start -
3 ucsc_exonStart_list.sga Exon start sites exon_start -
4 ucsc_intronStart_list.sga Intron start sites intron_start -
5 ucsc_transcriptEnd_list.sga Transcript end sites polyA_site -

Technical Notes

Table was downloaded in March 2014.
Genes were retained if annotated as "protein coding" or if they had a protein ID or a refSeq status.

Last update: 11 Oct 2017