Hoskins 2011, Drosophila embryo cap analysis of gene expression (CAGE).

Description

This series contains only the CAGE data from the paper cited below. The RLM-RACE and cap-trapped ESTs are not included.

Source

Samples

From D. melanogaster (Apr 2006 BDGP R5/dm3).

:

Filename Description Feature GEO-ID
1 embryo_cage.sga Embryo CAGE TSS -

Technical Notes

SAM files were then converted into bam (only reads with mapping quality scores greater or equal to 30) using samtools v0.1.14 and to bed using bamToBed v2.12.0 (bedtools). SGA conversion was carried out using bed2sga.pl (ChIP-Seq v. 1.5.3).

References

Last update: 12 Oct 2017