MachiBase: a Drosophila melanogaster 5\'-end mRNA transcription database.

Description

This series contains transcription start site mapping from MachiBase. The data were generated with the oligo-capping technology.

Source

Samples

From D. melanogaster (Apr 2006 BDGP R5/dm3).

:

Filename Description Feature GEO-ID
1 embryo_oligocap.sga Embryo oligo-capping TSS -
2 larva_oligocap.sga Larva oligo-capping TSS -
3 youngFemale_oligocap.sga Young female oligo-capping TSS -
4 youngMale_oligocap.sga Young male oligo-capping TSS -
5 oldFemale_oligocap.sga Old female oligo-capping TSS -
6 oldMale_oligocap.sga Old male oligo-capping TSS -
7 s2_oligocap.sga S2 cells oligo-capping TSS -
8 all_oligocap.sga All tissues oligo-capping TSS -

Technical Notes

According to the readme file included in the tar archive from MachiBase, the 5'end tags were mapped to the Drosophila genome using BLAT as alignment tool allowing for up to three mismatches.

References

Last update: 12 Oct 2017