Bonn 2012, Analisys of H3 modifications in mesoderm.

Description

This experiment describes several histone signatures in mesodermal cells of D. malanogaster. The BAM files of this dataset have been downloaded from EBI and converted into SGA files.

Source

Samples

From D. melanogaster (Aug 2014 BDGP Rel6 + ISO1 MT/dm6).

ChIP-seq data:

Filename Description Feature GEO-ID
1 ERR031126.sga Mesoderm input Rep1 input -
2 ERR031127.sga Mesoderm input Rep2 input -
3 ERR031128.sga Mesoderm H3 Rep1 H3 -
4 ERR031129.sga Mesoderm H3 Rep2 H3 -
5 ERR031130.sga Mesoderm H3K27ac Rep1 H3K27ac -
6 ERR031131.sga Mesoderm H3K27ac Rep2 H3K27ac -
7 ERR031132.sga Mesoderm H3K4me1 Rep1 H3K4me1 -
8 ERR031133.sga Mesoderm H3K4me1 Rep2 H3K4me1 -
9 ERR031134.sga Mesoderm H3K4me3 Rep1 H3K4me3 -
10 ERR031135.sga Mesoderm H3K4me3 Rep2 H3K4me3 -
11 ERR031136.sga Mesoderm H3K36me3 Rep1 H3K36me3 -
12 ERR031137.sga Mesoderm H3K36me3 Rep2 H3K36me3 -
13 ERR031138.sga Mesoderm H3K79me3 Rep1 H3K79me3 -
14 ERR031139.sga Mesoderm H3K79me3 Rep2 H3K79me3 -
15 ERR031140.sga Mesoderm H3K27me3 Rep1 H3K27me3 -
16 ERR031141.sga Mesoderm H3K27me3 Rep2 H3K27me3 -
17 ERR031142.sga Mesoderm PolII Rep1 PolII -
18 ERR031143.sga Mesoderm PolII Rep2 PolII -
19 ERR031144.sga Mesoderm BiTS_Mef2 BiTS_Mef2 -
20 ERR031145.sga Mesoderm Mef2 Rep1 Mef2 -
21 ERR031146.sga Mesoderm Mef2 Rep2 Mef2 -

Technical Notes

Dataset lifted-over from dm3.

References

Last update: 26 Sep 2017