Schodel 2018, HIF binding sites in MCF-7 breast cancer cells.

Description

ChIP-Seq analysis of HIF-1 alpha, HIF-2 alpha, and HIF-1 beta binding in MCF-7 breast cancer cells.

Source

Samples

From H. sapiens (March 2006 NCBI36/hg18).

ChIP-seq data:

Filename Description Feature GEO-ID
1 GSM700944.sga MCF-7|HIF-1 alpha|| HIF1a GSM700944
2 GSM700947.sga MCF-7|HIF-1 beta|| HIF1b GSM700947
3 GSM700945.sga MCF-7|HIF-2 alpha|| HIF2a GSM700945
4 GSM700946.sga MCF-7|HIF-1 alpha control|| control GSM700946
5 GSM700948.sga MCF-7|HIF-1 beta control|| control GSM700948

Technical Notes

TXT file (Illumina output files) were converted into BED using an ad-hoc perl script. BED to SGA conversion was carried out using bed2sga.pl (ChIP-Seq v. 1.5.3).

References

Last update: 12 Feb 2018