SNP collection from 1000 genome project


SNPs, Indels and Structural Variation data from the 1000 Genome Project (version 3.20101123). SNPs with a frequence between 0.1 and 0.9 are referred as common and can be analyzed separately.


Files downloaded from the 1000 Genome Project portal via URL:
Input file format: VCF


From Human Feb. 2009 (GRCh37/hg19) Assembly

Filename Description Feature GEO-ID
1 1000genomes_SNP.sga All SNPs SNP -
2 1000genomes_SNP_common.sga Common SNPs SNP Sequence-derived -
3 1000genomes_INDEL.sga All Indels INDEL -
4 1000genomes_SV.sga All Structural Variations SV -


Via M, Gignoux C, Burchard EG.
The 1000 Genomes Project: new opportunities for research and social challenges. Genome Med. 2010 Jan 21;2(1):3. PMID: 20193048