ChIP-seq data:
| Filename | Description | Feature | GEO-ID | |
| 1 | GSM1022640.sga | A549 CTCF rep1 | CTCF | GSM1022640 |
| 2 | GSM1022639.sga | A549 CTCF rep2 | CTCF | GSM1022639 |
| 3 | GSM749695.sga | AG04449 CTCF rep1 | CTCF | GSM749695 |
| 4 | GSM749678.sga | AG04449 CTCF rep2 | CTCF | GSM749678 |
| 5 | GSM749769.sga | AG04450 CTCF rep1 | CTCF | GSM749769 |
| 6 | GSM1022635.sga | AG04450 CTCF rep2 | CTCF | GSM1022635 |
| 7 | GSM749750.sga | AG09309 CTCF rep1 | CTCF | GSM749750 |
| 8 | GSM749680.sga | AG09309 CTCF rep2 | CTCF | GSM749680 |
| 9 | GSM749728.sga | AG09319 CTCF rep1 | CTCF | GSM749728 |
| 10 | GSM749723.sga | AG09319 CTCF rep2 | CTCF | GSM749723 |
| 11 | GSM749714.sga | AG10803 CTCF rep1 | CTCF | GSM749714 |
| 12 | GSM749759.sga | AG10803 CTCF rep2 | CTCF | GSM749759 |
| 13 | GSM749666.sga | AoAF CTCF rep1 | CTCF | GSM749666 |
| 14 | GSM749736.sga | AoAF CTCF rep2 | CTCF | GSM749736 |
| 15 | GSM1022653.sga | BE2_C CTCF rep1 | CTCF | GSM1022653 |
| 16 | GSM1022650.sga | BE2_C CTCF rep2 | CTCF | GSM1022650 |
| 17 | GSM749677.sga | BJ CTCF rep1 | CTCF | GSM749677 |
| 18 | GSM749752.sga | BJ CTCF rep2 | CTCF | GSM749752 |
| 19 | GSM749748.sga | Caco-2 CTCF rep1 | CTCF | GSM749748 |
| 20 | GSM749689.sga | Caco-2 CTCF rep2 | CTCF | GSM749689 |
| 21 | GSM749708.sga | GM06990 CTCF rep1 | CTCF | GSM749708 |
| 22 | GSM749705.sga | GM06990 CTCF rep2 | CTCF | GSM749705 |
| 23 | GSM749711.sga | GM12801 CTCF rep1 | CTCF | GSM749711 |
| 24 | GSM749676.sga | GM12864 CTCF rep1 | CTCF | GSM749676 |
| 25 | GSM749762.sga | GM12864 CTCF rep2 | CTCF | GSM749762 |
| 26 | GSM1022664.sga | GM12864 CTCF rep3 | CTCF | GSM1022664 |
| 27 | GSM749740.sga | GM12865 CTCF rep1 | CTCF | GSM749740 |
| 28 | GSM749725.sga | GM12865 CTCF rep2 | CTCF | GSM749725 |
| 29 | GSM1022636.sga | GM12865 CTCF rep3 | CTCF | GSM1022636 |
| 30 | GSM849305.sga | GM12866 CTCF rep1 | CTCF | GSM849305 |
| 31 | GSM849301.sga | GM12867 CTCF rep1 | CTCF | GSM849301 |
| 32 | GSM849300.sga | GM12868 CTCF rep1 | CTCF | GSM849300 |
| 33 | GSM849303.sga | GM12869 CTCF rep1 | CTCF | GSM849303 |
| 34 | GSM849302.sga | GM12870 CTCF rep1 | CTCF | GSM849302 |
| 35 | GSM849304.sga | GM12871 CTCF rep1 | CTCF | GSM849304 |
| 36 | GSM749694.sga | GM12872 CTCF rep1 | CTCF | GSM749694 |
| 37 | GSM749692.sga | GM12872 CTCF rep2 | CTCF | GSM749692 |
| 38 | GSM1022633.sga | GM12872 CTCF rep3 | CTCF | GSM1022633 |
| 39 | GSM749730.sga | GM12873 CTCF rep1 | CTCF | GSM749730 |
| 40 | GSM749686.sga | GM12873 CTCF rep2 | CTCF | GSM749686 |
| 41 | GSM1022629.sga | GM12873 CTCF rep3 | CTCF | GSM1022629 |
| 42 | GSM749757.sga | GM12874 CTCF rep1 | CTCF | GSM749757 |
| 43 | GSM749741.sga | GM12874 CTCF rep2 | CTCF | GSM749741 |
| 44 | GSM749764.sga | GM12875 CTCF rep1 | CTCF | GSM749764 |
| 45 | GSM749670.sga | GM12875 CTCF rep2 | CTCF | GSM749670 |
| 46 | GSM749704.sga | GM12878 CTCF rep1 | CTCF | GSM749704 |
| 47 | GSM749706.sga | GM12878 CTCF rep2 | CTCF | GSM749706 |
| 48 | GSM749696.sga | HA-sp CTCF rep1 | CTCF | GSM749696 |
| 49 | GSM1022668.sga | HA-sp CTCF rep2 | CTCF | GSM1022668 |
| 50 | GSM1022661.sga | HAc CTCF rep1 | CTCF | GSM1022661 |
| 51 | GSM1022662.sga | HAc CTCF rep2 | CTCF | GSM1022662 |
| 52 | GSM749743.sga | HBMEC CTCF rep1 | CTCF | GSM749743 |
| 53 | GSM749710.sga | HBMEC CTCF rep2 | CTCF | GSM749710 |
| 54 | GSM749732.sga | HCFaa CTCF rep1 | CTCF | GSM749732 |
| 55 | GSM1022657.sga | HCM CTCF rep1 | CTCF | GSM1022657 |
| 56 | GSM1022677.sga | HCM CTCF rep2 | CTCF | GSM1022677 |
| 57 | GSM749735.sga | HCPEpiC CTCF rep1 | CTCF | GSM749735 |
| 58 | GSM749745.sga | HCPEpiC CTCF rep2 | CTCF | GSM749745 |
| 59 | GSM1022652.sga | HCT-116 CTCF rep1 | CTCF | GSM1022652 |
| 60 | GSM1022651.sga | HCT-116 CTCF rep2 | CTCF | GSM1022651 |
| 61 | GSM749712.sga | HEEpiC CTCF rep1 | CTCF | GSM749712 |
| 62 | GSM749726.sga | HEEpiC CTCF rep2 | CTCF | GSM749726 |
| 63 | GSM749668.sga | HEK293 CTCF rep1 | CTCF | GSM749668 |
| 64 | GSM749687.sga | HEK293 CTCF rep2 | CTCF | GSM749687 |
| 65 | GSM1022644.sga | HFF CTCF rep1 | CTCF | GSM1022644 |
| 66 | GSM1022671.sga | HFF-Myc CTCF rep1 | CTCF | GSM1022671 |
| 67 | GSM1022669.sga | HFF-Myc CTCF rep2 | CTCF | GSM1022669 |
| 68 | GSM749688.sga | HL-60 CTCF rep1 | CTCF | GSM749688 |
| 69 | GSM749753.sga | HMEC CTCF rep1 | CTCF | GSM749753 |
| 70 | GSM1022631.sga | HMEC CTCF rep2 | CTCF | GSM1022631 |
| 71 | GSM749665.sga | HMF CTCF rep1 | CTCF | GSM749665 |
| 72 | GSM749675.sga | HMF CTCF rep2 | CTCF | GSM749675 |
| 73 | GSM749681.sga | HPAF CTCF rep1 | CTCF | GSM749681 |
| 74 | GSM749751.sga | HPAF CTCF rep2 | CTCF | GSM749751 |
| 75 | GSM749699.sga | HPF CTCF rep1 | CTCF | GSM749699 |
| 76 | GSM749717.sga | HPF CTCF rep2 | CTCF | GSM749717 |
| 77 | GSM749727.sga | HRE CTCF rep1 | CTCF | GSM749727 |
| 78 | GSM749737.sga | HRE CTCF rep2 | CTCF | GSM749737 |
| 79 | GSM749673.sga | HRPEpiC CTCF rep1 | CTCF | GSM749673 |
| 80 | GSM1022665.sga | HRPEpiC CTCF rep2 | CTCF | GSM1022665 |
| 81 | GSM749674.sga | HUVEC CTCF rep1 | CTCF | GSM749674 |
| 82 | GSM749749.sga | HUVEC CTCF rep2 | CTCF | GSM749749 |
| 83 | GSM1022630.sga | HVMF CTCF rep1 | CTCF | GSM1022630 |
| 84 | GSM1022628.sga | HVMF CTCF rep2 | CTCF | GSM1022628 |
| 85 | GSM749729.sga | HeLa-S3 CTCF rep1 | CTCF | GSM749729 |
| 86 | GSM749739.sga | HeLa-S3 CTCF rep2 | CTCF | GSM749739 |
| 87 | GSM749715.sga | HepG2 CTCF rep1 | CTCF | GSM749715 |
| 88 | GSM749683.sga | HepG2 CTCF rep2 | CTCF | GSM749683 |
| 89 | GSM749690.sga | K562 CTCF rep1 | CTCF | GSM749690 |
| 90 | GSM749733.sga | K562 CTCF rep2 | CTCF | GSM749733 |
| 91 | GSM1022658.sga | MCF-7 CTCF rep1 | CTCF | GSM1022658 |
| 92 | GSM1022663.sga | MCF-7 CTCF rep2 | CTCF | GSM1022663 |
| 93 | GSM1022643.sga | NB4 CTCF rep1 | CTCF | GSM1022643 |
| 94 | GSM1022675.sga | NHDF-neo CTCF rep1 | CTCF | GSM1022675 |
| 95 | GSM1022676.sga | NHDF-neo CTCF rep2 | CTCF | GSM1022676 |
| 96 | GSM749707.sga | NHEK CTCF rep1 | CTCF | GSM749707 |
| 97 | GSM749747.sga | NHEK CTCF rep2 | CTCF | GSM749747 |
| 98 | GSM1022626.sga | NHLF CTCF rep1 | CTCF | GSM1022626 |
| 99 | GSM1022667.sga | RPTEC CTCF rep1 | CTCF | GSM1022667 |
| 100 | GSM1022666.sga | RPTEC CTCF rep2 | CTCF | GSM1022666 |
| 101 | GSM749684.sga | SAEC CTCF rep1 | CTCF | GSM749684 |
| 102 | GSM749779.sga | SAEC CTCF rep2 | CTCF | GSM749779 |
| 103 | GSM749693.sga | SK-N-SH_RA CTCF rep1 | CTCF | GSM749693 |
| 104 | GSM749667.sga | SK-N-SH_RA CTCF rep2 | CTCF | GSM749667 |
| 105 | GSM749768.sga | WERI-Rb-1 CTCF rep1 | CTCF | GSM749768 |
| 106 | GSM749679.sga | WERI-Rb-1 CTCF rep2 | CTCF | GSM749679 |
| 107 | GSM1022637.sga | WI-38 CTCF rep1 | CTCF | GSM1022637 |
| 108 | GSM1022634.sga | WI-38 CTCF rep2 | CTCF | GSM1022634 |
| 109 | GSM1022674.sga | A549 Input rep1 | Input | GSM1022674 |
| 110 | GSM749702.sga | AG04449 Input rep1 | Input | GSM749702 |
| 111 | GSM749697.sga | AG04450 Input rep1 | Input | GSM749697 |
| 112 | GSM749718.sga | AG09309 Input rep1 | Input | GSM749718 |
| 113 | GSM749671.sga | AG09319 Input rep1 | Input | GSM749671 |
| 114 | GSM749734.sga | AG10803 Input rep1 | Input | GSM749734 |
| 115 | GSM749772.sga | AoAF Input rep1 | Input | GSM749772 |
| 116 | GSM1022648.sga | BE2_C Input rep1 | Input | GSM1022648 |
| 117 | GSM749770.sga | BJ Input rep1 | Input | GSM749770 |
| 118 | GSM1022625.sga | CD20+_RO01778 Input rep1 | Input | GSM1022625 |
| 119 | GSM1022645.sga | CD20+_RO01794 Input rep1 | Input | GSM1022645 |
| 120 | GSM749691.sga | Caco-2 Input rep1 | Input | GSM749691 |
| 121 | GSM749731.sga | GM06990 Input rep1 | Input | GSM749731 |
| 122 | GSM749701.sga | GM12801 Input rep1 | Input | GSM749701 |
| 123 | GSM749754.sga | GM12864 Input rep1 | Input | GSM749754 |
| 124 | GSM749777.sga | GM12865 Input rep1 | Input | GSM749777 |
| 125 | GSM749765.sga | GM12872 Input rep1 | Input | GSM749765 |
| 126 | GSM749685.sga | GM12873 Input rep1 | Input | GSM749685 |
| 127 | GSM749742.sga | GM12874 Input rep1 | Input | GSM749742 |
| 128 | GSM749724.sga | GM12875 Input rep1 | Input | GSM749724 |
| 129 | GSM749669.sga | GM12878 Input rep1 | Input | GSM749669 |
| 130 | GSM1022649.sga | H7-hESC Input rep1 | Input | GSM1022649 |
| 131 | GSM749720.sga | HA-sp Input rep1 | Input | GSM749720 |
| 132 | GSM1022673.sga | HAc Input rep1 | Input | GSM1022673 |
| 133 | GSM749746.sga | HBMEC Input rep1 | Input | GSM749746 |
| 134 | GSM749713.sga | HCF Input rep1 | Input | GSM749713 |
| 135 | GSM749761.sga | HCFaa Input rep1 | Input | GSM749761 |
| 136 | GSM749738.sga | HCM Input rep1 | Input | GSM749738 |
| 137 | GSM749776.sga | HCPEpiC Input rep1 | Input | GSM749776 |
| 138 | GSM749774.sga | HCT-116 Input rep1 | Input | GSM749774 |
| 139 | GSM749698.sga | HEEpiC Input rep1 | Input | GSM749698 |
| 140 | GSM749767.sga | HEK293 Input rep1 | Input | GSM749767 |
| 141 | GSM1022627.sga | HFF Input rep1 | Input | GSM1022627 |
| 142 | GSM1022654.sga | HFF-Myc Input rep1 | Input | GSM1022654 |
| 143 | GSM749775.sga | HL-60 Input rep1 | Input | GSM749775 |
| 144 | GSM749755.sga | HMEC Input rep1 | Input | GSM749755 |
| 145 | GSM749763.sga | HMF Input rep1 | Input | GSM749763 |
| 146 | GSM749709.sga | HPAF Input rep1 | Input | GSM749709 |
| 147 | GSM749773.sga | HPF Input rep1 | Input | GSM749773 |
| 148 | GSM749778.sga | HRE Input rep1 | Input | GSM749778 |
| 149 | GSM749771.sga | HRPEpiC Input rep1 | Input | GSM749771 |
| 150 | GSM749758.sga | HUVEC Input rep1 | Input | GSM749758 |
| 151 | GSM749703.sga | HVMF Input rep1 | Input | GSM749703 |
| 152 | GSM749721.sga | HeLa-S3 Input rep1 | Input | GSM749721 |
| 153 | GSM749756.sga | HepG2 Input rep1 | Input | GSM749756 |
| 154 | GSM749672.sga | Jurkat Input rep1 | Input | GSM749672 |
| 155 | GSM749719.sga | K562 Input rep1 | Input | GSM749719 |
| 156 | GSM1022672.sga | LNCaP Input rep1 | Input | GSM1022672 |
| 157 | GSM749760.sga | MCF-7 Input rep1 | Input | GSM749760 |
| 158 | GSM1022659.sga | Monocytes-CD14+_RO01746 Input rep1 | Input | GSM1022659 |
| 159 | GSM749716.sga | NB4 Input rep1 | Input | GSM749716 |
| 160 | GSM749722.sga | NHDF-neo Input rep1 | Input | GSM749722 |
| 161 | GSM749744.sga | NHEK Input rep1 | Input | GSM749744 |
| 162 | GSM1022641.sga | NHLF Input rep1 | Input | GSM1022641 |
| 163 | GSM1022632.sga | PANC-1 Input rep1 | Input | GSM1022632 |
| 164 | GSM1022642.sga | RPTEC Input rep1 | Input | GSM1022642 |
| 165 | GSM749682.sga | SAEC Input rep1 | Input | GSM749682 |
| 166 | GSM1022638.sga | SK-N-MC Input rep1 | Input | GSM1022638 |
| 167 | GSM749700.sga | SK-N-SH_RA Input rep1 | Input | GSM749700 |
| 168 | GSM1022646.sga | SKMC Input rep1 | Input | GSM1022646 |
| 169 | GSM749766.sga | WERI-Rb-1 Input rep1 | Input | GSM749766 |
| 170 | GSM1022647.sga | WI-38 Input rep1 | Input | GSM1022647 |
| 171 | GSM1022655.sga | WI-38 Input rep2 | Input | GSM1022655 |
| 172 | GSM1022656.sga | H7-hESC Input rep1 | Input | GSM1022656 |
| 173 | GSM1022660.sga | H7-hESC Input rep2 | Input | GSM1022660 |
| 174 | GSM1022670.sga | H7-hESC Input rep3 | Input | GSM1022670 |
59 new samples were added to this data serie in November 2013. They are: GSM1022625 GSM1022626 GSM1022627 GSM1022628 GSM1022629 GSM1022630 GSM1022631 GSM1022632 GSM1022633 GSM1022634 GSM1022635 GSM1022636 GSM1022637 GSM1022638 GSM1022639 GSM1022640 GSM1022641 GSM1022642 GSM1022643 GSM1022644 GSM1022645 GSM1022646 GSM1022647 GSM1022648 GSM1022649 GSM1022650 GSM1022651 GSM1022652 GSM1022653 GSM1022654 GSM1022655 GSM1022656 GSM1022657 GSM1022658 GSM1022659 GSM1022660 GSM1022661 GSM1022662 GSM1022663 GSM1022664 GSM1022665 GSM1022666 GSM1022667 GSM1022668 GSM1022669 GSM1022670 GSM1022671 GSM1022672 GSM1022673 GSM1022674 GSM1022675 GSM1022676 GSM1022677 GSM849300 GSM849301 GSM849302 GSM849303 GSM849304 GSM849305.
FASTQ files were extracted from SRA files using fastq-dump (SRA toolkit v2.5.0) and mapped to the genome using Bowtie v0.12.8. SAM files were then converted into bam using samtools v0.1.14 and to bed using bamToBed v2.12.0 (bedtools). SGA conversion was carried out using bed2sga.pl (ChIP-Seq v. 1.5.3).