GSE32465, Transcription Factor Binding Sites by ChIP-seq.


The ChIP-Seq method was used to assay chromatin fragments bound by specific or general transcription factors



From H. sapiens (Feb 2009 GRCh37/hg19).

ChIP-seq data:

Filename Description Feature GEO-ID
1 GSM803453-A549-CTCF-DEX_100nM.sga A549 DEX_100nM CTCF CTCF GSM803453
2 GSM803456-A549-CTCF-EtOH_0.02pct.sga A549 EtOH_0.02pct CTCF CTCF GSM803456
3 GSM803357-A549-GR-DEX_500pM.sga A549 DEX_500pM GR GR GSM803357
4 GSM803358-A549-GR-DEX_50nM.sga A549 DEX_50nM GR GR GSM803358
5 GSM803359-A549-GR-DEX_5nM.sga A549 DEX_5nM GR GR GSM803359
6 GSM803371-A549-GR-DEX_100nM.sga A549 DEX_100nM GR GR GSM803371
7 GSM803373-A549-GR-EtOH_0.02pct.sga A549 EtOH_0.02pct GR GR GSM803373
8 GSM803395-A549-GR-EtOH_0.02pct.sga A549 EtOH_0.02pct GR GR GSM803395
9 GSM803360-A549-Pol2-EtOH_0.02pct.sga A549 EtOH_0.02pct Pol2 Pol2 GSM803360
10 GSM803361-A549-Pol2-DEX_100nM.sga A549 DEX_100nM Pol2 Pol2 GSM803361
11 GSM803412-A549-RevXlinkChromatin-EtOH_0.02pct.sga A549 EtOH_0.02pct RevXlinkChromatin RevXlinkChromatin GSM803412
12 GSM803417-A549-RevXlinkChromatin-DEX_100nM.sga A549 DEX_100nM RevXlinkChromatin RevXlinkChromatin GSM803417
13 GSM803435-A549-RevXlinkChromatin-EtOH_0.02pct.sga A549 EtOH_0.02pct RevXlinkChromatin RevXlinkChromatin GSM803435
14 GSM803465-A549-RevXlinkChromatin-DEX_100nM.sga A549 DEX_100nM RevXlinkChromatin RevXlinkChromatin GSM803465
15 GSM803429-A549-USF-1-EtOH_0.02pct.sga A549 EtOH_0.02pct USF-1 USF-1 GSM803429
16 GSM803457-A549-USF-1-DEX_100nM.sga A549 DEX_100nM USF-1 USF-1 GSM803457
17 GSM803421-ECC-1-ERalpha-DMSO_0.02pct.sga ECC-1 DMSO_0.02pct ERalpha ERalpha GSM803421
18 GSM803422-ECC-1-ERalpha-Estradiol_10nM.sga ECC-1 Estradiol_10nM ERalpha ERalpha GSM803422
19 GSM803541-ECC-1-ERalpha-Genistein_100nM.sga ECC-1 Genistein_100nM ERalpha ERalpha GSM803541
20 GSM803444-ECC-1-FOXA1-DMSO_0.02pct.sga ECC-1 DMSO_0.02pct FOXA1 FOXA1 GSM803444
21 GSM803340-ECC-1-GR-DEX_100nM.sga ECC-1 DEX_100nM GR GR GSM803340
22 GSM803464-ECC-1-GR-EtOH_0.02pct.sga ECC-1 EtOH_0.02pct GR GR GSM803464
23 GSM803536-ECC-1-Pol2-DMSO_0.02pct.sga ECC-1 DMSO_0.02pct Pol2 Pol2 GSM803536
24 GSM803445-ECC-1-RevXlinkChromatin-DMSO_0.02pct.sga ECC-1 DMSO_0.02pct RevXlinkChromatin RevXlinkChromatin GSM803445
25 GSM803508-GM12878-ATF3-None.sga GM12878 None ATF3 ATF3 GSM803508
26 GSM803538-GM12878-BATF-None.sga GM12878 None BATF BATF GSM803538
27 GSM803388-GM12878-BCL11A-None.sga GM12878 None BCL11A BCL11A GSM803388
28 GSM803342-GM12878-BCL3-None.sga GM12878 None BCL3 BCL3 GSM803342
29 GSM803509-GM12878-BCLAF1-None.sga GM12878 None BCLAF1 BCLAF1 GSM803509
30 GSM803386-GM12878-EBF1-None.sga GM12878 None EBF1 EBF1 GSM803386
31 GSM803496-GM12878-ELF1-None.sga GM12878 None ELF1 ELF1 GSM803496
32 GSM803510-GM12878-ETS1-None.sga GM12878 None ETS1 ETS1 GSM803510
33 GSM803434-GM12878-Egr-1-None.sga GM12878 None Egr-1 Egr-1 GSM803434
34 GSM803356-GM12878-GABP-None.sga GM12878 None GABP GABP GSM803356
35 GSM803390-GM12878-IRF4-None.sga GM12878 None IRF4 IRF4 GSM803390
36 GSM803511-GM12878-MEF2A-None.sga GM12878 None MEF2A MEF2A GSM803511
37 GSM803420-GM12878-MEF2C-None.sga GM12878 None MEF2C MEF2C GSM803420
38 GSM803349-GM12878-NRSF-None.sga GM12878 None NRSF NRSF GSM803349
39 GSM803391-GM12878-PAX5-C20-None.sga GM12878 None PAX5-C20 PAX5-C20 GSM803391
40 GSM803362-GM12878-PAX5-N19-None.sga GM12878 None PAX5-N19 PAX5-N19 GSM803362
41 GSM803534-GM12878-POU2F2-None.sga GM12878 None POU2F2 POU2F2 GSM803534
42 GSM803531-GM12878-PU.1-None.sga GM12878 None PU.1 PU.1 GSM803531
43 GSM803532-GM12878-Pbx3-None.sga GM12878 None Pbx3 Pbx3 GSM803532
44 GSM803355-GM12878-Pol2-None.sga GM12878 None Pol2 Pol2 GSM803355
45 GSM803485-GM12878-Pol2-4H8-None.sga GM12878 None Pol2-4H8 Pol2-4H8 GSM803485
46 GSM803341-GM12878-RXRA-None.sga GM12878 None RXRA RXRA GSM803341
47 GSM803416-GM12878-Rad21-None.sga GM12878 None Rad21 Rad21 GSM803416
48 GSM803346-GM12878-RevXlinkChromatin-None.sga GM12878 None RevXlinkChromatin rep1 RevXlinkChromatin GSM803346
49 GSM803351-GM12878-RevXlinkChromatin-None.sga GM12878 None RevXlinkChromatin rep2 RevXlinkChromatin GSM803351
50 GSM803413-GM12878-RevXlinkChromatin-None.sga GM12878 None RevXlinkChromatin rep3 RevXlinkChromatin GSM803413
51 GSM803436-GM12878-RevXlinkChromatin-None.sga GM12878 None RevXlinkChromatin rep4 RevXlinkChromatin GSM803436
52 GSM803338-GM12878-SIX5-None.sga GM12878 None SIX5 SIX5 GSM803338
53 GSM803363-GM12878-SP1-None.sga GM12878 None SP1 SP1 GSM803363
54 GSM803350-GM12878-SRF-None.sga GM12878 None SRF rep1 SRF GSM803350
55 GSM803477-GM12878-SRF-None.sga GM12878 None SRF rep2 SRF GSM803477
56 GSM803537-GM12878-TAF1-None.sga GM12878 None TAF1 TAF1 GSM803537
57 GSM803389-GM12878-TCF12-None.sga GM12878 None TCF12 TCF12 GSM803389
58 GSM803347-GM12878-USF-1-None.sga GM12878 None USF-1 USF-1 GSM803347
59 GSM803406-GM12878-YY1-None.sga GM12878 None YY1 YY1 GSM803406
60 GSM803392-GM12878-ZBTB33-None.sga GM12878 None ZBTB33 ZBTB33 GSM803392
61 GSM803411-GM12878-ZEB1-None.sga GM12878 None ZEB1 ZEB1 GSM803411
62 GSM803387-GM12878-p300-None.sga GM12878 None p300 p300 GSM803387
63 GSM803337-GM12891-PAX5-C20-None.sga GM12891 None PAX5-C20 PAX5-C20 GSM803337
64 GSM803397-GM12891-POU2F2-None.sga GM12891 None POU2F2 POU2F2 GSM803397
65 GSM803398-GM12891-PU.1-None.sga GM12891 None PU.1 PU.1 GSM803398
66 GSM803399-GM12891-Pol2-None.sga GM12891 None Pol2 Pol2 GSM803399
67 GSM803400-GM12891-Pol2-4H8-None.sga GM12891 None Pol2-4H8 Pol2-4H8 GSM803400
68 GSM803467-GM12891-RevXlinkChromatin-None.sga GM12891 None RevXlinkChromatin rep1 RevXlinkChromatin GSM803467
69 GSM803481-GM12891-RevXlinkChromatin-None.sga GM12891 None RevXlinkChromatin rep2 RevXlinkChromatin GSM803481
70 GSM803393-GM12891-TAF1-None.sga GM12891 None TAF1 TAF1 GSM803393
71 GSM803535-GM12891-YY1-None.sga GM12891 None YY1 YY1 GSM803535
72 GSM803334-GM12892-PAX5-C20-None.sga GM12892 None PAX5-C20 PAX5-C20 GSM803334
73 GSM803487-GM12892-Pol2-None.sga GM12892 None Pol2 Pol2 GSM803487
74 GSM803490-GM12892-Pol2-4H8-None.sga GM12892 None Pol2-4H8 Pol2-4H8 GSM803490
75 GSM803482-GM12892-RevXlinkChromatin-None.sga GM12892 None RevXlinkChromatin rep1 RevXlinkChromatin GSM803482
76 GSM803488-GM12892-RevXlinkChromatin-None.sga GM12892 None RevXlinkChromatin rep2 RevXlinkChromatin GSM803488
77 GSM803489-GM12892-TAF1-None.sga GM12892 None TAF1 TAF1 GSM803489
78 GSM803516-GM12892-YY1-None.sga GM12892 None YY1 YY1 GSM803516
79 GSM803512-H1-hESC-ATF3-None.sga H1-hESC None ATF3 ATF3 GSM803512
80 GSM803396-H1-hESC-BCL11A-None.sga H1-hESC None BCL11A rep1 BCL11A GSM803396
81 GSM803476-H1-hESC-BCL11A-None.sga H1-hESC None BCL11A rep2 BCL11A GSM803476
82 GSM803419-H1-hESC-CTCF-None.sga H1-hESC None CTCF CTCF GSM803419
83 GSM803430-H1-hESC-Egr-1-None.sga H1-hESC None Egr-1 Egr-1 GSM803430
84 GSM803382-H1-hESC-FOSL1-None.sga H1-hESC None FOSL1 FOSL1 GSM803382
85 GSM803424-H1-hESC-GABP-None.sga H1-hESC None GABP GABP GSM803424
86 GSM803345-H1-hESC-HDAC2-None.sga H1-hESC None HDAC2 HDAC2 GSM803345
87 GSM803529-H1-hESC-JunD-None.sga H1-hESC None JunD JunD GSM803529
88 GSM803437-H1-hESC-NANOG-None.sga H1-hESC None NANOG NANOG GSM803437
89 GSM803365-H1-hESC-NRSF-None.sga H1-hESC None NRSF NRSF GSM803365
90 GSM803438-H1-hESC-POU5F1-None.sga H1-hESC None POU5F1 POU5F1 GSM803438
91 GSM803366-H1-hESC-Pol2-None.sga H1-hESC None Pol2 Pol2 GSM803366
92 GSM803484-H1-hESC-Pol2-4H8-None.sga H1-hESC None Pol2-4H8 Pol2-4H8 GSM803484
93 GSM803506-H1-hESC-RXRA-None.sga H1-hESC None RXRA RXRA GSM803506
94 GSM803466-H1-hESC-Rad21-None.sga H1-hESC None Rad21 Rad21 GSM803466
95 GSM803339-H1-hESC-RevXlinkChromatin-None.sga H1-hESC None RevXlinkChromatin rep1 RevXlinkChromatin GSM803339
96 GSM803364-H1-hESC-RevXlinkChromatin-None.sga H1-hESC None RevXlinkChromatin rep2 RevXlinkChromatin GSM803364
97 GSM803405-H1-hESC-SIX5-None.sga H1-hESC None SIX5 SIX5 GSM803405
98 GSM803377-H1-hESC-SP1-None.sga H1-hESC None SP1 SP1 GSM803377
99 GSM803425-H1-hESC-SRF-None.sga H1-hESC None SRF SRF GSM803425
100 GSM803428-H1-hESC-Sin3Ak-20-None.sga H1-hESC None Sin3Ak-20 Sin3Ak-20 GSM803428
101 GSM803450-H1-hESC-TAF1-None.sga H1-hESC None TAF1 TAF1 GSM803450
102 GSM803501-H1-hESC-TAF7-None.sga H1-hESC None TAF7 TAF7 GSM803501
103 GSM803427-H1-hESC-TCF12-None.sga H1-hESC None TCF12 TCF12 GSM803427
104 GSM803426-H1-hESC-USF-1-None.sga H1-hESC None USF-1 USF-1 GSM803426
105 GSM803513-H1-hESC-YY1-None.sga H1-hESC None YY1 YY1 GSM803513
106 GSM803542-H1-hESC-p300-None.sga H1-hESC None p300 p300 GSM803542
107 GSM803474-HCT-116-Pol2-4H8-None.sga HCT-116 None Pol2-4H8 Pol2-4H8 GSM803474
108 GSM803475-HCT-116-RevXlinkChromatin-None.sga HCT-116 None RevXlinkChromatin RevXlinkChromatin GSM803475
109 GSM803354-HCT-116-YY1-None.sga HCT-116 None YY1 YY1 GSM803354
110 GSM803458-HCT-116-ZBTB33-None.sga HCT-116 None ZBTB33 ZBTB33 GSM803458
111 GSM803454-HeLa-S3-GABP-None.sga HeLa-S3 None GABP GABP GSM803454
112 GSM803478-HeLa-S3-NRSF-None.sga HeLa-S3 None NRSF NRSF GSM803478
113 GSM803533-HeLa-S3-Pol2-None.sga HeLa-S3 None Pol2 Pol2 GSM803533
114 GSM803479-HeLa-S3-RevXlinkChromatin-None.sga HeLa-S3 None RevXlinkChromatin RevXlinkChromatin GSM803479
115 GSM803455-HeLa-S3-TAF1-None.sga HeLa-S3 None TAF1 TAF1 GSM803455
116 GSM803503-HepG2-ATF3-None.sga HepG2 None ATF3 ATF3 GSM803503
117 GSM803483-HepG2-BHLHE40-None.sga HepG2 None BHLHE40 BHLHE40 GSM803483
118 GSM803486-HepG2-CTCF-None.sga HepG2 None CTCF CTCF GSM803486
119 GSM803415-HepG2-ELF1-None.sga HepG2 None ELF1 ELF1 GSM803415
120 GSM803451-HepG2-FOSL2-None.sga HepG2 None FOSL2 FOSL2 GSM803451
121 GSM803432-HepG2-FOXA1-None.sga HepG2 None FOXA1 rep1 FOXA1 GSM803432
122 GSM803461-HepG2-FOXA1-None.sga HepG2 None FOXA1 rep2 FOXA1 GSM803461
123 GSM803403-HepG2-FOXA2-None.sga HepG2 None FOXA2 FOXA2 GSM803403
124 GSM803343-HepG2-GABP-None.sga HepG2 None GABP GABP GSM803343
125 GSM803493-HepG2-HDAC2-None.sga HepG2 None HDAC2 HDAC2 GSM803493
126 GSM803460-HepG2-HNF4A-None.sga HepG2 None HNF4A HNF4A GSM803460
127 GSM803404-HepG2-HNF4G-None.sga HepG2 None HNF4G HNF4G GSM803404
128 GSM803500-HepG2-JunD-None.sga HepG2 None JunD JunD GSM803500
129 GSM803344-HepG2-NRSF-None.sga HepG2 None NRSF NRSF GSM803344
130 GSM803368-HepG2-Pol2-None.sga HepG2 None Pol2 Pol2 GSM803368
131 GSM803452-HepG2-RXRA-None.sga HepG2 None RXRA RXRA GSM803452
132 GSM803517-HepG2-Rad21-None.sga HepG2 None Rad21 Rad21 GSM803517
133 GSM803462-HepG2-RevXlinkChromatin-None.sga HepG2 None RevXlinkChromatin rep1 RevXlinkChromatin GSM803462
134 GSM803463-HepG2-RevXlinkChromatin-None.sga HepG2 None RevXlinkChromatin rep2 RevXlinkChromatin GSM803463
135 GSM803521-HepG2-RevXlinkChromatin-None.sga HepG2 None RevXlinkChromatin rep3 RevXlinkChromatin GSM803521
136 GSM803507-HepG2-SP1-None.sga HepG2 None SP1 SP1 GSM803507
137 GSM803502-HepG2-SRF-None.sga HepG2 None SRF SRF GSM803502
138 GSM803530-HepG2-Sin3Ak-20-None.sga HepG2 None Sin3Ak-20 Sin3Ak-20 GSM803530
139 GSM803367-HepG2-TAF1-None.sga HepG2 None TAF1 TAF1 GSM803367
140 GSM803336-HepG2-TCF12-None.sga HepG2 None TCF12 TCF12 GSM803336
141 GSM803527-HepG2-USF-1-None.sga HepG2 None USF-1 USF-1 GSM803527
142 GSM803381-HepG2-YY1-None.sga HepG2 None YY1 YY1 GSM803381
143 GSM803418-HepG2-ZBTB33-None.sga HepG2 None ZBTB33 rep1 ZBTB33 GSM803418
144 GSM803449-HepG2-ZBTB33-None.sga HepG2 None ZBTB33 rep2 ZBTB33 GSM803449
145 GSM803499-HepG2-p300-None.sga HepG2 None p300 p300 GSM803499
146 GSM803380-K562-ATF3-None.sga K562 None ATF3 ATF3 GSM803380
147 GSM803515-K562-BCLAF1-None.sga K562 None BCLAF1 BCLAF1 GSM803515
148 GSM803401-K562-CTCFL-None.sga K562 None CTCFL CTCFL GSM803401
149 GSM803469-K562-E2F6-None.sga K562 None E2F6 E2F6 GSM803469
150 GSM803494-K562-ELF1-None.sga K562 None ELF1 ELF1 GSM803494
151 GSM803442-K562-ETS1-None.sga K562 None ETS1 ETS1 GSM803442
152 GSM803414-K562-Egr-1-None.sga K562 None Egr-1 Egr-1 GSM803414
153 GSM803439-K562-FOSL1-None.sga K562 None FOSL1 FOSL1 GSM803439
154 GSM803524-K562-GABP-None.sga K562 None GABP GABP GSM803524
155 GSM803540-K562-GATA2-None.sga K562 None GATA2 GATA2 GSM803540
156 GSM803471-K562-HDAC2-None.sga K562 None HDAC2 HDAC2 GSM803471
157 GSM803379-K562-MEF2A-None.sga K562 None MEF2A MEF2A GSM803379
158 GSM803523-K562-Max-None.sga K562 None Max Max GSM803523
159 GSM803440-K562-NRSF-None.sga K562 None NRSF NRSF GSM803440
160 GSM803384-K562-PU.1-None.sga K562 None PU.1 PU.1 GSM803384
161 GSM803410-K562-Pol2-None.sga K562 None Pol2 Pol2 GSM803410
162 GSM803443-K562-Pol2-4H8-None.sga K562 None Pol2-4H8 Pol2-4H8 GSM803443
163 GSM803447-K562-Rad21-None.sga K562 None Rad21 Rad21 GSM803447
164 GSM803352-K562-RevXlinkChromatin-None.sga K562 None RevXlinkChromatin rep1 RevXlinkChromatin GSM803352
165 GSM803468-K562-RevXlinkChromatin-None.sga K562 None RevXlinkChromatin rep2 RevXlinkChromatin GSM803468
166 GSM803378-K562-SIX5-None.sga K562 None SIX5 rep1 SIX5 GSM803378
167 GSM803383-K562-SIX5-None.sga K562 None SIX5 rep2 SIX5 GSM803383
168 GSM803505-K562-SP1-None.sga K562 None SP1 SP1 GSM803505
169 GSM803402-K562-SP2-None.sga K562 None SP2 SP2 GSM803402
170 GSM803520-K562-SRF-None.sga K562 None SRF SRF GSM803520
171 GSM803525-K562-Sin3Ak-20-None.sga K562 None Sin3Ak-20 Sin3Ak-20 GSM803525
172 GSM803431-K562-TAF1-None.sga K562 None TAF1 TAF1 GSM803431
173 GSM803407-K562-TAF7-None.sga K562 None TAF7 TAF7 GSM803407
174 GSM803408-K562-THAP1-None.sga K562 None THAP1 THAP1 GSM803408
175 GSM803441-K562-USF-1-None.sga K562 None USF-1 USF-1 GSM803441
176 GSM803470-K562-YY1-None.sga K562 None YY1 YY1 GSM803470
177 GSM803504-K562-ZBTB33-None.sga K562 None ZBTB33 ZBTB33 GSM803504
178 GSM803473-K562-ZBTB7A-None.sga K562 None ZBTB7A ZBTB7A GSM803473
179 GSM803370-PANC-1-NRSF-None.sga PANC-1 None NRSF NRSF GSM803370
180 GSM803394-PANC-1-RevXlinkChromatin-None.sga PANC-1 None RevXlinkChromatin RevXlinkChromatin GSM803394
181 GSM803480-PFSK-1-FOXP2-None.sga PFSK-1 None FOXP2 FOXP2 GSM803480
182 GSM803369-PFSK-1-NRSF-None.sga PFSK-1 None NRSF NRSF GSM803369
183 GSM803376-PFSK-1-RevXlinkChromatin-None.sga PFSK-1 None RevXlinkChromatin RevXlinkChromatin GSM803376
184 GSM803353-SK-N-MC-FOXP2-None.sga SK-N-MC None FOXP2 FOXP2 GSM803353
185 GSM803423-SK-N-MC-RevXlinkChromatin-None.sga SK-N-MC None RevXlinkChromatin rep1 RevXlinkChromatin GSM803423
186 GSM803492-SK-N-MC-RevXlinkChromatin-None.sga SK-N-MC None RevXlinkChromatin rep2 RevXlinkChromatin GSM803492
187 GSM803335-SK-N-SH-NRSF-None.sga SK-N-SH None NRSF NRSF GSM803335
188 GSM803528-SK-N-SH-RevXlinkChromatin-None.sga SK-N-SH None RevXlinkChromatin RevXlinkChromatin GSM803528
189 GSM803333-SK-N-SH_RA-CTCF-None.sga SK-N-SH_RA None CTCF CTCF GSM803333
190 GSM803497-SK-N-SH_RA-Rad21-None.sga SK-N-SH_RA None Rad21 Rad21 GSM803497
191 GSM803526-SK-N-SH_RA-RevXlinkChromatin-None.sga SK-N-SH_RA None RevXlinkChromatin RevXlinkChromatin GSM803526
192 GSM803472-SK-N-SH_RA-USF1-None.sga SK-N-SH_RA None USF1 USF1 GSM803472
193 GSM803498-SK-N-SH_RA-YY1-None.sga SK-N-SH_RA None YY1 YY1 GSM803498
194 GSM803495-SK-N-SH_RA-p300-None.sga SK-N-SH_RA None p300 p300 GSM803495
195 GSM803348-T-47D-CTCF-DMSO_0.02pct.sga T-47D DMSO_0.02pct CTCF CTCF GSM803348
196 GSM803374-T-47D-ERalpha-Genistein_100nM.sga T-47D Genistein_100nM ERalpha ERalpha GSM803374
197 GSM803519-T-47D-ERalpha-DMSO_0.02pct.sga T-47D DMSO_0.02pct ERalpha ERalpha GSM803519
198 GSM803539-T-47D-ERalpha-Estradiol_10nM.sga T-47D Estradiol_10nM ERalpha ERalpha GSM803539
199 GSM803409-T-47D-FOXA1-DMSO_0.02pct.sga T-47D DMSO_0.02pct FOXA1 FOXA1 GSM803409
200 GSM803514-T-47D-GATA3-DMSO_0.02pct.sga T-47D DMSO_0.02pct GATA3 GATA3 GSM803514
201 GSM803433-T-47D-RevXlinkChromatin-DMSO_0.02pct.sga T-47D DMSO_0.02pct RevXlinkChromatin RevXlinkChromatin GSM803433
202 GSM803522-T-47D-p300-DMSO_0.02pct.sga T-47D DMSO_0.02pct p300 p300 GSM803522

Technical Notes

BAM files were converted to bed using bamToBed v2.12.0 (bedtools). SGA conversion was carried out using (ChIP-Seq v. 1.5.3).


Last update: 26 Sep 2017