Adult heart.

Description

This samples serie was produced as part of the RoadMap Project.

Source

Files downloaded from GEO FTP server: ftp://ftp.ncbi.nlm.nih.gov/pub/geo/DATA/roadmapepigenomics/by_sample/
Input file format: BED

Samples

From H. sapiens (Feb 2009 GRCh37/hg19).

ChIP-seq data:

	Filename	Description	Feature	GEO-ID
1	GSM906392_UCSD.Aorta.H3K27ac.STL003.sga	Aorta\|H3K27ac	H3K27ac	GSM906392
2	GSM910560_UCSD.Aorta.H3K27me3.STL003.sga	Aorta\|H3K27me3	H3K27me3	GSM910560
3	GSM1059440_UCSD.Aorta.H3K36me3.STL002.sga	Aorta\|H3K36me3\|rep 1	H3K36me3	GSM1059440
4	GSM910566_UCSD.Aorta.H3K36me3.STL003.sga	Aorta\|H3K36me3\|rep 2	H3K36me3	GSM910566
5	GSM1013150_UCSD.Aorta.H3K4me1.STL003.sga	Aorta\|H3K4me1\|rep 1	H3K4me1	GSM1013150
6	GSM1059448_UCSD.Aorta.H3K4me1.STL002.sga	Aorta\|H3K4me1\|rep 2	H3K4me1	GSM1059448
7	GSM906410_UCSD.Aorta.H3K9me3.STL003.sga	Aorta\|H3K9me3	H3K9me3	GSM906410
8	GSM1013169_UCSD.Aorta.Input.STL002.sga	Aorta\|Input\|rep 1	Input	GSM1013169
9	GSM906413_UCSD.Aorta.Input.STL003.sga	Aorta\|Input\|rep 2	Input	GSM906413
10	GSM1127173_UCSD.Left_Ventricle.H3K27ac.STL011.sga	Left Ventricle\|H3K27ac\|rep 1	H3K27ac	GSM1127173
11	GSM906396_UCSD.Left_Ventricle.H3K27ac.STL003.sga	Left Ventricle\|H3K27ac\|rep 2	H3K27ac	GSM906396
12	GSM908951_UCSD.Left_Ventricle.H3K27ac.STL001.sga	Left Ventricle\|H3K27ac\|rep 3	H3K27ac	GSM908951
13	GSM908952_UCSD.Left_Ventricle.H3K27me3.STL001.sga	Left Ventricle\|H3K27me3\|rep 1	H3K27me3	GSM908952
14	GSM910562_UCSD.Left_Ventricle.H3K27me3.STL003.sga	Left Ventricle\|H3K27me3\|rep 2	H3K27me3	GSM910562
15	GSM906402_UCSD.Left_Ventricle.H3K36me3.STL001.sga	Left Ventricle\|H3K36me3\|rep 1	H3K36me3	GSM906402
16	GSM910569_UCSD.Left_Ventricle.H3K36me3.STL003.sga	Left Ventricle\|H3K36me3\|rep 2	H3K36me3	GSM910569
17	GSM906404_UCSD.Left_Ventricle.H3K4me1.STL001.sga	Left Ventricle\|H3K4me1\|rep 1	H3K4me1	GSM906404
18	GSM910575_UCSD.Left_Ventricle.H3K4me1.STL003.sga	Left Ventricle\|H3K4me1\|rep 2	H3K4me1	GSM910575
19	GSM906406_UCSD.Left_Ventricle.H3K4me3.STL001.sga	Left Ventricle\|H3K4me3\|rep 1	H3K4me3	GSM906406
20	GSM910580_UCSD.Left_Ventricle.H3K4me3.STL003.sga	Left Ventricle\|H3K4me3\|rep 2	H3K4me3	GSM910580
21	GSM906409_UCSD.Left_Ventricle.H3K9me3.STL001.sga	Left Ventricle\|H3K9me3\|rep 1	H3K9me3	GSM906409
22	GSM906412_UCSD.Left_Ventricle.H3K9me3.STL003.sga	Left Ventricle\|H3K9me3\|rep 2	H3K9me3	GSM906412
23	GSM906418_UCSD.Left_Ventricle.Input.STL003.sga	Left Ventricle\|Input\|rep 1	Input	GSM906418
24	GSM908968_UCSD.Left_Ventricle.Input.STL001.sga	Left Ventricle\|Input\|rep 2	Input	GSM908968
25	GSM910557_UCSD.Right_Atrium.H3K27ac.STL003.sga	Right Atrium\|H3K27ac	H3K27ac	GSM910557
26	GSM1013144_UCSD.Right_Atrium.H3K36me3.STL003.sga	Right Atrium\|H3K36me3	H3K36me3	GSM1013144
27	GSM915335_UCSD.Right_Atrium.H3K4me1.STL003.sga	Right Atrium\|H3K4me1	H3K4me1	GSM915335
28	GSM910587_UCSD.Right_Atrium.H3K9me3.STL003.sga	Right Atrium\|H3K9me3	H3K9me3	GSM910587
29	GSM906421_UCSD.Right_Atrium.Input.STL003.sga	Right Atrium\|Input	Input	GSM906421
30	GSM1013124_UCSD.Right_Ventricle.H3K27ac.STL001.sga	Right Ventricle\|H3K27ac	H3K27ac	GSM1013124
31	GSM1013145_UCSD.Right_Ventricle.H3K36me3.STL003.sga	Right Ventricle\|H3K36me3\|rep 1	H3K36me3	GSM1013145
32	GSM1059438_UCSD.Right_Ventricle.H3K36me3.STL001.sga	Right Ventricle\|H3K36me3\|rep 2	H3K36me3	GSM1059438
33	GSM1059445_UCSD.Right_Ventricle.H3K4me1.STL001.sga	Right Ventricle\|H3K4me1\|rep 1	H3K4me1	GSM1059445
34	GSM956022_UCSD.Right_Ventricle.H3K4me1.STL003.sga	Right Ventricle\|H3K4me1\|rep 2	H3K4me1	GSM956022
35	GSM1120357_UCSD.Right_Ventricle.H3K9me3.STL001.sga	Right Ventricle\|H3K9me3	H3K9me3	GSM1120357
36	GSM1013167_UCSD.Right_Ventricle.Input.STL001.sga	Right Ventricle\|Input\|rep 1	Input	GSM1013167
37	GSM915338_UCSD.Right_Ventricle.Input.STL003.sga	Right Ventricle\|Input\|rep 2	Input	GSM915338

DNase FAIRE data:

	Filename	Description	Feature	GEO-ID
1	GSM1027322_UW.Heart.ChromatinAccessibility.STL001.DNase.DS20383.sga	Heart\|DNase-seq	DNase-seq	GSM1027322

Technical Notes

BED files were downloaded from the FTP and converted in SGA format using bed2sga (ChIP-seq).

References