SwissRegulon, database of genome-wide annotations of regulatory sites.

Description

SwissRegulon annotation of Transcription Start Sites and Transcription Start Clusters generated with FANTOM4 CAGE data.

Source

Samples

From H. sapiens (Feb 2009 GRCh37/hg19).

Genome Annotation:

Filename Description Feature GEO-ID
1 promoters_hg19.sga Promoters TSS -
2 hg19_TSC_v1.sga Transcription Start Clusters TSC -
3 tss_clusters_level3_hg19.sga Promoters regions TSS -

Technical Notes

GFF files were converted in SGA. TSS were mapped to the 'Representative position' of the transcription start region. The files promoters_hg19.sga and tss_clusters_level3_hg19.sga are LiftedOver from hg18.

References

Last update: 26 Sep 2017