SwissRegulon, database of genome-wide annotations of regulatory sites.
SwissRegulon annotation of Transcription Start Sites and
Transcription Start Clusters generated with FANTOM4 CAGE data.
- Raw data was downloaded
- Input file format: GFF
- Download date: 26-9-2016
From H. sapiens (Feb 2009 GRCh37/hg19).
GFF files were converted in SGA. TSS were mapped to the
'Representative position' of the transcription start
region. The files promoters_hg19.sga and
tss_clusters_level3_hg19.sga are LiftedOver from hg18.
Pachkov M, Balwierz PJ, Arnold P, Ozonov E, van Nimwegen E
SwissRegulon, a database of genome-wide annotations of regulatory sites: recent updates.
Nucleic Acids Res. 2013 Jan;41(Database issue):D214-20. doi: 10.1093/nar/gks1145. Epub 2012 Nov 24.