FANTOM5, A promoter-level mammalian expression atlas.

Description

FANTOM5 mouse data. Promoters were mapped using CAGE data in a large collection of primary cells and tissues.

Source

Samples

From M. musculus (July 2007 NCBI37/mm9).

:

Filename Description Feature GEO-ID
1 ClontechMouseUniversalReferenceTotalRNA_cPool1.CNhs10609.10001-101A3.mm9.nobarcode.sga Clontech Mouse Universal Reference Total RNA|pool1 CAGE -
2 FollicleAssociatedEpithelium_cPool2.CNhs13211.10262-104D1.mm9.nobarcode.sga Follicle Associated Epithelium|pool2 CAGE -
3 FollicleAssociatedEpithelium_cPool3.CNhs13200.10263-104D2.mm9.nobarcode.sga Follicle Associated Epithelium|pool3 CAGE -
4 IleumEpithelium_cPool1.CNhs13199.10252-104B9.mm9.nobarcode.sga Ileum epithelium|pool1 CAGE -
5 SABiosciencesXpressRefMouseUniversalTotalRNA_cPool1.CNhs10611.10003-101A7.mm9.nobarcode.sga SABiosciences XpressRef Mouse Universal Total RNA|pool1 CAGE -
6 UniversalRNA-MouseNormalTissuesBiochain_cPool1.CNhs10613.10008-101B6.mm9.nobarcode.sga Universal RNA - Mouse Normal Tissues Biochain|pool1 CAGE -
7 accessoryAxillaryLymphNode_cAdult.CNhs10475.1063-29H9.mm9.nobarcode.sga accessory axillary lymph node|adult CAGE -
8 adrenalGland_cAdult.CNhs10508.49-24D7.mm9.nobarcode.sga adrenal gland|adult CAGE -
9 adrenalGland_cEmbryoE14.CNhs11038.406-44C5.mm9.nobarcode.sga adrenal gland|embryo E14 CAGE -
10 adrenalGland_cEmbryoE16.CNhs11004.1254-43D6.mm9.nobarcode.sga adrenal gland|embryo E16 CAGE -
11 adrenalGland_cEmbryoE17.CNhs11043.1263-45I1.mm9.nobarcode.sga adrenal gland|embryo E17 CAGE -
12 adrenalGland_cEmbryoE18.CNhs11026.1262-18F5.mm9.nobarcode.sga adrenal gland|embryo E18 CAGE -
13 adrenalGland_cNeonateN00.CNhs11191.1311-23C1.mm9.nobarcode.sga adrenal gland|neonate N00 CAGE -
14 adrenalGland_cNeonateN25.CNhs11223.1377-27I3.mm9.nobarcode.sga adrenal gland|neonate N25 CAGE -
15 amnion_cAdultPregnantDay17_e5.CNhs10488.583-22A8.mm9.nobarcode.sga amnion|adult pregnant day17.5 CAGE -
16 aorta_cAdult.CNhs10498.46-23H1.mm9.nobarcode.sga aorta|adult CAGE -
17 bone_0_8osFemoris_9_cAdult.CNhs10483.56-12G2.mm9.nobarcode.sga bone (os femoris)|adult CAGE -
18 bone_0_8osFemoris_9_cNeonateN02.CNhs11227.1985-43F5.mm9.nobarcode.sga bone (os femoris)|neonate N02 CAGE -
19 bone_0_8osFemoris_9_cNeonateN16.CNhs11225.1525-43A6.mm9.nobarcode.sga bone (os femoris)|neonate N16 CAGE -
20 bone_0_8osFemoris_9_cNeonateN20.CNhs11195.1350-25C3.mm9.nobarcode.sga bone (os femoris)|neonate N20 CAGE -
21 cecum_cAdult.CNhs10467.37-13H4.mm9.nobarcode.sga cecum|adult CAGE -
22 cerebellum_cAdult.CNhs10494.15-8B2.mm9.nobarcode.sga cerebellum|adult CAGE -
23 cerebellum_cNeonateN30.CNhs11135.1395-42I2.mm9.nobarcode.sga cerebellum|neonate N30 CAGE -
24 colon_cAdult.CNhs10468.36-18H7.mm9.nobarcode.sga colon|adult CAGE -
25 corporaQuadrigemina_cAdult.CNhs10501.16-22A4.mm9.nobarcode.sga corpora quadrigemina|adult CAGE -
26 corpusStriatum_cAdult.CNhs10487.19-21D8.mm9.nobarcode.sga corpus striatum|adult CAGE -
27 corpusStriatum_cNeonateN00.CNhs11226.630-43F1.mm9.nobarcode.sga corpus striatum|neonate N00 CAGE -
28 cortex_cAdult.CNhs10473.12-14D5.mm9.nobarcode.sga cortex|adult CAGE -
29 cortex_cNeonateN30.CNhs11107.1392-42F2.mm9.nobarcode.sga cortex|neonate N30 CAGE -
30 diencephalon_cAdult.CNhs10482.20-12F2.mm9.nobarcode.sga diencephalon|adult CAGE -
31 diencephalon_cNeonateN30.CNhs11201.1388-42B2.mm9.nobarcode.sga diencephalon|neonate N30 CAGE -
32 epididymisAndSeminiferousTubule_cNeonateN00.CNhs11218.1310-23B1.mm9.nobarcode.sga epididymis and seminiferous tubule|neonate N00 CAGE -
33 epididymisAndSeminiferousTubule_cNeonateN30.CNhs11199.1387-42A2.mm9.nobarcode.sga epididymis and seminiferous tubule|neonate N30 CAGE -
34 epididymis_cAdult.CNhs10490.58-23B2.mm9.nobarcode.sga epididymis|adult CAGE -
35 eyeball_cAdult.CNhs10484.31-12G4.mm9.nobarcode.sga eyeball|adult CAGE -
36 eyeball_cEmbryoE12.CNhs11016.345-16C6.mm9.nobarcode.sga eyeball|embryo E12 CAGE -
37 eyeball_cEmbryoE14.CNhs10521.399-16E2.mm9.nobarcode.sga eyeball|embryo E14 CAGE -
38 eyeball_cEmbryoE15.CNhs10593.426-16C9.mm9.nobarcode.sga eyeball|embryo E15 CAGE -
39 eyeball_cEmbryoE17.CNhs11023.1261-18D4.mm9.nobarcode.sga eyeball|embryo E17 CAGE -
40 eyeball_cNeonateN00.CNhs11207.633-15C6.mm9.nobarcode.sga eyeball|neonate N00 CAGE -
41 eyeball_cNeonateN01.CNhs11140.1532-43E7.mm9.nobarcode.sga eyeball|neonate N01 CAGE -
42 eyeball_cNeonateN02.CNhs11205.1551-44G8.mm9.nobarcode.sga eyeball|neonate N02 CAGE -
43 eyeball_cNeonateN16.CNhs11188.777-19A2.mm9.nobarcode.sga eyeball|neonate N16 CAGE -
44 forelimb_cEmbryoE11.CNhs10596.335-25E2.mm9.nobarcode.sga forelimb|embryo E11 CAGE -
45 forelimb_cEmbryoE12.CNhs10600.359-14H2.mm9.nobarcode.sga forelimb|embryo E12 CAGE -
46 forelimb_cEmbryoE13.CNhs10589.384-1E2.mm9.nobarcode.sga forelimb|embryo E13 CAGE -
47 forelimb_cEmbryoE14.CNhs10577.413-26A8.mm9.nobarcode.sga forelimb|embryo E14 CAGE -
48 forelimb_cEmbryoE15.CNhs11007.437-20E7.mm9.nobarcode.sga forelimb|embryo E15 CAGE -
49 forelimb_cEmbryoE17.CNhs10598.1517-43C4.mm9.nobarcode.sga forelimb|embryo E17 CAGE -
50 forelimb_cEmbryoE18.CNhs11008.1520-43B5.mm9.nobarcode.sga forelimb|embryo E18 CAGE -
51 gonad_cEmbryoE13.CNhs11044.1564-45I6.mm9.nobarcode.sga gonad|embryo E13 CAGE -
52 heart_cEmbryoE11.CNhs10586.331-24E9.mm9.nobarcode.sga heart|embryo E11 CAGE -
53 heart_cEmbryoE12.CNhs11015.353-12F5.mm9.nobarcode.sga heart|embryo E12 CAGE -
54 heart_cEmbryoE13.CNhs11013.376-3I9.mm9.nobarcode.sga heart|embryo E13 CAGE -
55 heart_cEmbryoE14.CNhs10597.403-26D4.mm9.nobarcode.sga heart|embryo E14 CAGE -
56 heart_cEmbryoE15.CNhs11017.431-16C8.mm9.nobarcode.sga heart|embryo E15 CAGE -
57 heart_cEmbryoE16.CNhs11021.457-17C6.mm9.nobarcode.sga heart|embryo E16 CAGE -
58 heart_cEmbryoE17.CNhs11025.479-18E5.mm9.nobarcode.sga heart|embryo E17 CAGE -
59 heart_cEmbryoE18.CNhs11030.1283-20G3.mm9.nobarcode.sga heart|embryo E18 CAGE -
60 heart_cNeonateN00.CNhs11213.639-21E3.mm9.nobarcode.sga heart|neonate N00 CAGE -
61 heart_cNeonateN03.CNhs11221.1349-25I2.mm9.nobarcode.sga heart|neonate N03 CAGE -
62 heart_cNeonateN10.CNhs11118.749-24G1.mm9.nobarcode.sga heart|neonate N10 CAGE -
63 heart_cNeonateN16.CNhs11209.782-15G1.mm9.nobarcode.sga heart|neonate N16 CAGE -
64 heart_cNeonateN20.CNhs11127.821-26I6.mm9.nobarcode.sga heart|neonate N20 CAGE -
65 heart_cNeonateN25.CNhs11196.1351-25D3.mm9.nobarcode.sga heart|neonate N25 CAGE -
66 heart_cNeonateN30.CNhs11202.1390-42D2.mm9.nobarcode.sga heart|neonate N30 CAGE -
67 hippocampus_cAdult.CNhs10478.13-16E8.mm9.nobarcode.sga hippocampus|adult CAGE -
68 hippocampus_cNeonateN00.CNhs11228.627-43G1.mm9.nobarcode.sga hippocampus|neonate N00 CAGE -
69 intestinalMucosa_cAdult.CNhs10506.860-29I3.mm9.nobarcode.sga intestinal mucosa|adult CAGE -
70 intestine_cAdult.CNhs10496.178-9A3.mm9.nobarcode.sga intestine|adult CAGE -
71 intestine_cEmbryoE12.CNhs11019.1251-16I5.mm9.nobarcode.sga intestine|embryo E12 CAGE -
72 intestine_cEmbryoE13.CNhs11010.381-16D5.mm9.nobarcode.sga intestine|embryo E13 CAGE -
73 intestine_cEmbryoE15.CNhs10602.976-16D8.mm9.nobarcode.sga intestine|embryo E15 CAGE -
74 intestine_cEmbryoE16.CNhs10585.463-22H4.mm9.nobarcode.sga intestine|embryo E16 CAGE -
75 intestine_cEmbryoE17.CNhs10582.482-18D3.mm9.nobarcode.sga intestine|embryo E17 CAGE -
76 intestine_cEmbryoE18.CNhs10526.1289-20F7.mm9.nobarcode.sga intestine|embryo E18 CAGE -
77 intestine_cNeonateN00.CNhs11126.644-26D1.mm9.nobarcode.sga intestine|neonate N00 CAGE -
78 intestine_cNeonateN01.CNhs11192.1322-23E9.mm9.nobarcode.sga intestine|neonate N01 CAGE -
79 intestine_cNeonateN06.CNhs11102.688-20B8.mm9.nobarcode.sga intestine|neonate N06 CAGE -
80 intestine_cNeonateN07.CNhs11095.720-20F2.mm9.nobarcode.sga intestine|neonate N07 CAGE -
81 intestine_cNeonateN10.CNhs11098.755-23A5.mm9.nobarcode.sga intestine|neonate N10 CAGE -
82 intestine_cNeonateN20.CNhs11187.827-18D1.mm9.nobarcode.sga intestine|neonate N20 CAGE -
83 intestine_cNeonateN25.CNhs11121.1352-25E3.mm9.nobarcode.sga intestine|neonate N25 CAGE -
84 intestine_cNeonateN30.CNhs11131.1384-42G1.mm9.nobarcode.sga intestine|neonate N30 CAGE -
85 kidney_cEmbryoE14.CNhs10606.411-4I9.mm9.nobarcode.sga kidney|embryo E14 CAGE -
86 kidney_cEmbryoE15.CNhs10997.434-16F8.mm9.nobarcode.sga kidney|embryo E15 CAGE -
87 kidney_cEmbryoE16.CNhs10584.464-22A5.mm9.nobarcode.sga kidney|embryo E16 CAGE -
88 kidney_cEmbryoE17.CNhs11028.483-18I2.mm9.nobarcode.sga kidney|embryo E17 CAGE -
89 kidney_cEmbryoE18.CNhs11001.1288-20C7.mm9.nobarcode.sga kidney|embryo E18 CAGE -
90 kidney_cNeonateN00.CNhs11214.646-21G7.mm9.nobarcode.sga kidney|neonate N00 CAGE -
91 kidney_cNeonateN10.CNhs11206.758-6D5.mm9.nobarcode.sga kidney|neonate N10 CAGE -
92 kidney_cNeonateN20.CNhs11113.832-19I1.mm9.nobarcode.sga kidney|neonate N20 CAGE -
93 kidney_cNeonateN25.CNhs11122.1353-25F3.mm9.nobarcode.sga kidney|neonate N25 CAGE -
94 kidney_cNeonateN30.CNhs11203.1385-42H1.mm9.nobarcode.sga kidney|neonate N30 CAGE -
95 liver_cAdultPregnantDay01.CNhs10466.508-5B2.mm9.nobarcode.sga liver|adult pregnant day01 CAGE -
96 liver_cEmbryoE12.CNhs10601.355-15F8.mm9.nobarcode.sga liver|embryo E12 CAGE -
97 liver_cEmbryoE13.CNhs10524.378-3H6.mm9.nobarcode.sga liver|embryo E13 CAGE -
98 liver_cEmbryoE14.CNhs10594.409-16E1.mm9.nobarcode.sga liver|embryo E14 CAGE -
99 liver_cEmbryoE15.CNhs10520.433-16D7.mm9.nobarcode.sga liver|embryo E15 CAGE -
100 liver_cEmbryoE16.CNhs10523.462-17F5.mm9.nobarcode.sga liver|embryo E16 CAGE -
101 liver_cEmbryoE17.CNhs10510.481-18A3.mm9.nobarcode.sga liver|embryo E17 CAGE -
102 liver_cEmbryoE18.CNhs10579.499-43G4.mm9.nobarcode.sga liver|embryo E18 CAGE -
103 liver_cNeonateN00.CNhs11117.641-24F4.mm9.nobarcode.sga liver|neonate N00 CAGE -
104 liver_cNeonateN03.CNhs11123.1345-25G2.mm9.nobarcode.sga liver|neonate N03 CAGE -
105 liver_cNeonateN06.CNhs11101.684-20A8.mm9.nobarcode.sga liver|neonate N06 CAGE -
106 liver_cNeonateN07.CNhs11103.716-20H2.mm9.nobarcode.sga liver|neonate N07 CAGE -
107 liver_cNeonateN10.CNhs11115.751-24B9.mm9.nobarcode.sga liver|neonate N10 CAGE -
108 liver_cNeonateN20.CNhs11220.823-25A3.mm9.nobarcode.sga liver|neonate N20 CAGE -
109 liver_cNeonateN25.CNhs11198.1368-26H1.mm9.nobarcode.sga liver|neonate N25 CAGE -
110 liver_cNeonateN30.CNhs11106.1382-42D1.mm9.nobarcode.sga liver|neonate N30 CAGE -
111 lung_cAdult.CNhs10474.28-22B1.mm9.nobarcode.sga lung|adult CAGE -
112 lung_cEmbryoE12.CNhs10522.354-16G2.mm9.nobarcode.sga lung|embryo E12 CAGE -
113 lung_cEmbryoE14.CNhs10604.404-26F8.mm9.nobarcode.sga lung|embryo E14 CAGE -
114 lung_cEmbryoE15.CNhs11020.432-17C5.mm9.nobarcode.sga lung|embryo E15 CAGE -
115 lung_cEmbryoE16.CNhs10998.458-17B6.mm9.nobarcode.sga lung|embryo E16 CAGE -
116 lung_cEmbryoE17.CNhs10605.480-44A6.mm9.nobarcode.sga lung|embryo E17 CAGE -
117 lung_cEmbryoE18.CNhs10583.1287-20I6.mm9.nobarcode.sga lung|embryo E18 CAGE -
118 lung_cNeonateN00.CNhs11224.640-42C6.mm9.nobarcode.sga lung|neonate N00 CAGE -
119 lung_cNeonateN06.CNhs11212.683-20E5.mm9.nobarcode.sga lung|neonate N06 CAGE -
120 lung_cNeonateN07.CNhs11111.715-19A3.mm9.nobarcode.sga lung|neonate N07 CAGE -
121 lung_cNeonateN10.CNhs11219.750-23E6.mm9.nobarcode.sga lung|neonate N10 CAGE -
122 lung_cNeonateN20.CNhs11109.822-18A4.mm9.nobarcode.sga lung|neonate N20 CAGE -
123 lung_cNeonateN25.CNhs11119.1359-25C7.mm9.nobarcode.sga lung|neonate N25 CAGE -
124 lung_cNeonateN30.CNhs11133.1394-42H2.mm9.nobarcode.sga lung|neonate N30 CAGE -
125 mammaryGland_cAdultLactatingDay02.CNhs10480.595-22B6.mm9.nobarcode.sga mammary gland|adult lactating day02 CAGE -
126 mammaryGland_cAdultPregnantDay19.CNhs10476.588-5H2.mm9.nobarcode.sga mammary gland|adult pregnant day19 CAGE -
127 medullaOblongata_cAdult.CNhs10477.17-12C2.mm9.nobarcode.sga medulla oblongata|adult CAGE -
128 medullaOblongata_cNeonateN30.CNhs11200.1396-42A3.mm9.nobarcode.sga medulla oblongata|neonate N30 CAGE -
129 muscle_0_8bicepsFemoris_9_cNeonateN30.CNhs11129.1389-42C2.mm9.nobarcode.sga muscle (biceps femoris)|neonate N30 CAGE -
130 olfactoryBrain_cAdult.CNhs10489.18-22I9.mm9.nobarcode.sga olfactory brain|adult CAGE -
131 ovary_cAdult.CNhs10507.91-2I7.mm9.nobarcode.sga ovary|adult CAGE -
132 ovary_cEmbryoE18.CNhs11040.505-44H7.mm9.nobarcode.sga ovary|embryo E18 CAGE -
133 ovary_cNeonateN00.CNhs11217.1299-22I4.mm9.nobarcode.sga ovary|neonate N00 CAGE -
134 oviduct_cAdultPregnantDay01.CNhs10500.988-6G6.mm9.nobarcode.sga oviduct|adult pregnant day01 CAGE -
135 pancreas_cAdult.CNhs10486.34-16E4.mm9.nobarcode.sga pancreas|adult CAGE -
136 pancreas_cEmbryoE14.CNhs11012.405-44F4.mm9.nobarcode.sga pancreas|embryo E14 CAGE -
137 pancreas_cEmbryoE15.CNhs11042.1556-45F2.mm9.nobarcode.sga pancreas|embryo E15 CAGE -
138 pancreas_cEmbryoE16.CNhs11003.460-26E5.mm9.nobarcode.sga pancreas|embryo E16 CAGE -
139 pancreas_cEmbryoE17.CNhs10599.1558-45G3.mm9.nobarcode.sga pancreas|embryo E17 CAGE -
140 pancreas_cEmbryoE18.CNhs10580.1535-43I7.mm9.nobarcode.sga pancreas|embryo E18 CAGE -
141 pancreas_cNeonateN00.CNhs11105.645-26G9.mm9.nobarcode.sga pancreas|neonate N00 CAGE -
142 pancreas_cNeonateN01.CNhs11138.1531-43D7.mm9.nobarcode.sga pancreas|neonate N01 CAGE -
143 pancreas_cNeonateN02.CNhs11139.1539-43D8.mm9.nobarcode.sga pancreas|neonate N02 CAGE -
144 pancreas_cNeonateN16.CNhs11136.787-43B6.mm9.nobarcode.sga pancreas|neonate N16 CAGE -
145 pancreas_cNeonateN25.CNhs11094.1555-45E2.mm9.nobarcode.sga pancreas|neonate N25 CAGE -
146 pancreas_cNeonateN30.CNhs11182.1548-44H5.mm9.nobarcode.sga pancreas|neonate N30 CAGE -
147 pituitaryGland_cAdult.CNhs10493.21-1G8.mm9.nobarcode.sga pituitary gland|adult CAGE -
148 pituitaryGland_cEmbryoE12.CNhs11018.346-16E6.mm9.nobarcode.sga pituitary gland|embryo E12 CAGE -
149 pituitaryGland_cEmbryoE13.CNhs11009.370-44C7.mm9.nobarcode.sga pituitary gland|embryo E13 CAGE -
150 pituitaryGland_cEmbryoE14.CNhs11037.398-44A5.mm9.nobarcode.sga pituitary gland|embryo E14 CAGE -
151 pituitaryGland_cEmbryoE15.CNhs10592.427-16B9.mm9.nobarcode.sga pituitary gland|embryo E15 CAGE -
152 pituitaryGland_cEmbryoE16.CNhs11036.449-43F6.mm9.nobarcode.sga pituitary gland|embryo E16 CAGE -
153 pituitaryGland_cEmbryoE17.CNhs11039.1265-44F5.mm9.nobarcode.sga pituitary gland|embryo E17 CAGE -
154 pituitaryGland_cNeonateN00.CNhs11190.1308-22E9.mm9.nobarcode.sga pituitary gland|neonate N00 CAGE -
155 placenta_cAdultPregnantDay10.CNhs10472.539-13I7.mm9.nobarcode.sga placenta|adult pregnant day10 CAGE -
156 placenta_cAdultPregnantDay17.CNhs10464.577-18G3.mm9.nobarcode.sga placenta|adult pregnant day17 CAGE -
157 prostate_cAdult.CNhs10470.859-1F8.mm9.nobarcode.sga prostate|adult CAGE -
158 skin_cAdult.CNhs10492.30-1C3.mm9.nobarcode.sga skin|adult CAGE -
159 skin_cNeonateN00.CNhs11124.650-25G4.mm9.nobarcode.sga skin|neonate N00 CAGE -
160 skin_cNeonateN03.CNhs11215.662-22H3.mm9.nobarcode.sga skin|neonate N03 CAGE -
161 skin_cNeonateN06.CNhs11097.693-20I5.mm9.nobarcode.sga skin|neonate N06 CAGE -
162 skin_cNeonateN10.CNhs11108.762-6C4.mm9.nobarcode.sga skin|neonate N10 CAGE -
163 smallIntestine_cNeonateN16.CNhs11114.790-21I1.mm9.nobarcode.sga small intestine|neonate N16 CAGE -
164 spinalCord_cAdult.CNhs10505.24-13C9.mm9.nobarcode.sga spinal cord|adult CAGE -
165 spleen_cAdult.CNhs10465.25-2G2.mm9.nobarcode.sga spleen|adult CAGE -
166 spleen_cEmbryoE16.CNhs11035.461-43C1.mm9.nobarcode.sga spleen|embryo E16 CAGE -
167 spleen_cEmbryoE18.CNhs11011.1271-21F2.mm9.nobarcode.sga spleen|embryo E18 CAGE -
168 spleen_cNeonateN10.CNhs11116.752-24D1.mm9.nobarcode.sga spleen|neonate N10 CAGE -
169 spleen_cNeonateN20.CNhs11112.824-19H1.mm9.nobarcode.sga spleen|neonate N20 CAGE -
170 spleen_cNeonateN25.CNhs11099.1354-25G3.mm9.nobarcode.sga spleen|neonate N25 CAGE -
171 stomach_cAdult.CNhs10503.33-1H6.mm9.nobarcode.sga stomach|adult CAGE -
172 stomach_cEmbryoE12.CNhs10588.356-43E3.mm9.nobarcode.sga stomach|embryo E12 CAGE -
173 stomach_cEmbryoE15.CNhs10603.1252-16G8.mm9.nobarcode.sga stomach|embryo E15 CAGE -
174 stomach_cEmbryoE16.CNhs11022.459-17D4.mm9.nobarcode.sga stomach|embryo E16 CAGE -
175 stomach_cEmbryoE17.CNhs11006.1035-18D5.mm9.nobarcode.sga stomach|embryo E17 CAGE -
176 stomach_cEmbryoE18.CNhs10999.1286-20C6.mm9.nobarcode.sga stomach|embryo E18 CAGE -
177 stomach_cNeonateN03.CNhs11193.1340-24B8.mm9.nobarcode.sga stomach|neonate N03 CAGE -
178 stomach_cNeonateN07.CNhs11210.718-18A9.mm9.nobarcode.sga stomach|neonate N07 CAGE -
179 stomach_cNeonateN25.CNhs11104.1355-25E4.mm9.nobarcode.sga stomach|neonate N25 CAGE -
180 stomach_cNeonateN30.CNhs11134.1386-42I1.mm9.nobarcode.sga stomach|neonate N30 CAGE -
181 submandibularGland_cAdult.CNhs10469.59-29C1.mm9.nobarcode.sga submandibular gland|adult CAGE -
182 testis_cAdult.CNhs10504.57-7G5.mm9.nobarcode.sga testis|adult CAGE -
183 testis_cEmbryoE13.CNhs11031.389-23F5.mm9.nobarcode.sga testis|embryo E13 CAGE -
184 testis_cEmbryoE15.CNhs11034.443-27C5.mm9.nobarcode.sga testis|embryo E15 CAGE -
185 testis_cEmbryoE16.CNhs11033.470-26G5.mm9.nobarcode.sga testis|embryo E16 CAGE -
186 testis_cEmbryoE17.CNhs11029.486-18I5.mm9.nobarcode.sga testis|embryo E17 CAGE -
187 testis_cEmbryoE18.CNhs11027.503-18G5.mm9.nobarcode.sga testis|embryo E18 CAGE -
188 testis_cNeonateN00.CNhs11189.1300-22B7.mm9.nobarcode.sga testis|neonate N00 CAGE -
189 testis_cNeonateN07.CNhs11222.726-26I4.mm9.nobarcode.sga testis|neonate N07 CAGE -
190 testis_cNeonateN10.CNhs11204.763-44D9.mm9.nobarcode.sga testis|neonate N10 CAGE -
191 testis_cNeonateN20.CNhs11110.839-18H3.mm9.nobarcode.sga testis|neonate N20 CAGE -
192 testis_cNeonateN30.CNhs11130.1391-42E2.mm9.nobarcode.sga testis|neonate N30 CAGE -
193 thymus_cAdult.CNhs10471.38-12B5.mm9.nobarcode.sga thymus|adult CAGE -
194 thymus_cEmbryoE14.CNhs11041.402-44I4.mm9.nobarcode.sga thymus|embryo E14 CAGE -
195 thymus_cEmbryoE15.CNhs11005.430-45I2.mm9.nobarcode.sga thymus|embryo E15 CAGE -
196 thymus_cEmbryoE16.CNhs11002.456-26C5.mm9.nobarcode.sga thymus|embryo E16 CAGE -
197 thymus_cEmbryoE17.CNhs10581.478-18C1.mm9.nobarcode.sga thymus|embryo E17 CAGE -
198 thymus_cEmbryoE18.CNhs10595.1273-19G4.mm9.nobarcode.sga thymus|embryo E18 CAGE -
199 thymus_cNeonateN02.CNhs11181.1541-43F8.mm9.nobarcode.sga thymus|neonate N02 CAGE -
200 thymus_cNeonateN03.CNhs11137.2104-43C7.mm9.nobarcode.sga thymus|neonate N03 CAGE -
201 thymus_cNeonateN06.CNhs11197.681-26C4.mm9.nobarcode.sga thymus|neonate N06 CAGE -
202 thymus_cNeonateN07.CNhs11211.713-19D3.mm9.nobarcode.sga thymus|neonate N07 CAGE -
203 thymus_cNeonateN10.CNhs11194.748-24E4.mm9.nobarcode.sga thymus|neonate N10 CAGE -
204 thymus_cNeonateN20.CNhs11186.820-7A2.mm9.nobarcode.sga thymus|neonate N20 CAGE -
205 thymus_cNeonateN25.CNhs11125.1362-25G7.mm9.nobarcode.sga thymus|neonate N25 CAGE -
206 thymus_cNeonateN30.CNhs11132.1393-42G2.mm9.nobarcode.sga thymus|neonate N30 CAGE -
207 tongue_cAdult.CNhs10499.32-1B4.mm9.nobarcode.sga tongue|adult CAGE -
208 urinaryBladder_cAdult.CNhs10481.879-12E4.mm9.nobarcode.sga urinary bladder|adult CAGE -
209 uterus_cAdult.CNhs10509.92-27E5.mm9.nobarcode.sga uterus|adult CAGE -
210 uterus_cAdultPregnantDay19.CNhs10497.590-15F5.mm9.nobarcode.sga uterus|adult pregnant day19 CAGE -
211 vagina_cAdult.CNhs10502.89-27D5.mm9.nobarcode.sga vagina|adult CAGE -
212 vesicularGland_cAdult.CNhs10491.51-27F8.mm9.nobarcode.sga vesicular gland|adult CAGE -
213 visualCortex-Wildtype_cNeonateN15_cDonor1.CNhs13031.10235-104A1.mm9.nobarcode.sga visual cortex - wildtype|neonate N15|donor1 CAGE -
214 visualCortex-Wildtype_cNeonateN15_cDonor2.CNhs13032.10236-104A2.mm9.nobarcode.sga visual cortex - wildtype|neonate N15|donor2 CAGE -
215 visualCortex-Wildtype_cNeonateN15_cDonor3.CNhs13033.10237-104A3.mm9.nobarcode.sga visual cortex - wildtype|neonate N15|donor3 CAGE -
216 visualCortex-Wildtype_cNeonateN15_cDonor5.CNhs13820.10349-105D7.mm9.nobarcode.sga visual cortex - wildtype|neonate N15|donor5 CAGE -
217 visualCortex-Wildtype_cNeonateN30_cDonor1.CNhs13034.10238-104A4.mm9.nobarcode.sga visual cortex - wildtype|neonate N30|donor1 CAGE -
218 visualCortex-Wildtype_cNeonateN30_cDonor2.CNhs13035.10239-104A5.mm9.nobarcode.sga visual cortex - wildtype|neonate N30|donor2 CAGE -
219 visualCortex-Wildtype_cNeonateN30_cDonor3.CNhs13036.10240-104A6.mm9.nobarcode.sga visual cortex - wildtype|neonate N30|donor3 CAGE -
220 visualCortex-Wildtype_cNeonateN60-70_cDonor1.CNhs13037.10241-104A7.mm9.nobarcode.sga visual cortex - wildtype|neonate N60-70|donor1 CAGE -
221 visualCortex-Wildtype_cNeonateN60-70_cDonor2.CNhs13038.10242-104A8.mm9.nobarcode.sga visual cortex - wildtype|neonate N60-70|donor2 CAGE -
222 visualCortex-Wildtype_cNeonateN60-70_cDonor3.CNhs13039.10243-104A9.mm9.nobarcode.sga visual cortex - wildtype|neonate N60-70|donor3 CAGE -
223 wholeBody_cEmbryoE11.CNhs11014.324-5I8.mm9.nobarcode.sga whole body|embryo E11 CAGE -
224 wholeBody_cEmbryoE12.CNhs10587.857-27C9.mm9.nobarcode.sga whole body|embryo E12 CAGE -
225 wholeBody_cEmbryoE13.CNhs10512.372-23H2.mm9.nobarcode.sga whole body|embryo E13 CAGE -
226 wholeBody_cEmbryoE14.CNhs10519.395-14B1.mm9.nobarcode.sga whole body|embryo E14 CAGE -
227 wholeBody_cEmbryoE14_e5.CNhs10578.420-27D2.mm9.nobarcode.sga whole body|embryo E14.5 CAGE -
228 wholeBody_cEmbryoE16.CNhs10514.453-14F2.mm9.nobarcode.sga whole body|embryo E16 CAGE -
229 wholeBody_cEmbryoE17.CNhs10517.475-3I5.mm9.nobarcode.sga whole body|embryo E17 CAGE -
230 wholeBody_cEmbryoE17_e5.CNhs10513.490-9F9.mm9.nobarcode.sga whole body|embryo E17.5 CAGE -
231 wholeBody_cEmbryoE18.CNhs10516.493-3B3.mm9.nobarcode.sga whole body|embryo E18 CAGE -
232 wholeBody_cNeonateN00.CNhs10525.657-19C2.mm9.nobarcode.sga whole body|neonate N00 CAGE -
233 wholeBody_cNeonateN01.CNhs10576.659-23C6.mm9.nobarcode.sga whole body|neonate N01 CAGE -
234 wholeBody_cNeonateN06.CNhs10515.692-21D1.mm9.nobarcode.sga whole body|neonate N06 CAGE -
235 wholeBody_cNeonateN10.CNhs10518.761-6B4.mm9.nobarcode.sga whole body|neonate N10 CAGE -
236 CD326_bEnterocyte_cPool1.CNhs13542.11848-124I3.mm9.nobarcode.sga CD326+ enterocyte|pool1 CAGE -
237 CD326_bEnterocyte_cPool2.CNhs13197.11849-124I4.mm9.nobarcode.sga CD326+ enterocyte|pool2 CAGE -
238 CD326_b_bEnterocyteIsolatedFromMice_cTreatedWithRANKL_cDay03_cPool2.CNhs13210.11853-124I8.mm9.nobarcode.sga CD326++ enterocyte isolated from mice|treated with RANKL|day03|pool2 CAGE -
239 CD4_bCD25_bRegulatoryTCells_cPool2_0_8Balb_cAJcl_9.CNhs13221.11818-124E9.mm9.nobarcode.sga CD4+CD25+ regulatory T cells|pool2 (Balb_cAJcl) CAGE -
240 CD4_bCD25-CD44-NaiveConventionalTCells_cAntiCD3_CD28Stimulation_c06hr_cPool1_0_8C57BL_6J_9.CNhs13218.11815-124E6.mm9.nobarcode.sga CD4+CD25-CD44- naive conventional T cells|antiCD3_CD28 stimulation|06hr|pool1 (C57BL_6J) CAGE -
241 CD4_bCD25-CD44-NaiveConventionalTCells_cAntiCD3_CD28Stimulation_c06hr_cPool2_0_8Balb_cAJcl_9.CNhs13225.11819-124F1.mm9.nobarcode.sga CD4+CD25-CD44- naive conventional T cells|antiCD3_CD28 stimulation|06hr|pool2 (Balb_cAJcl) CAGE -
242 CD4_bCD25-CD44-NaiveConventionalTCells_cPMAAndIonomycinStimulation_c02hr_cPool1_0_8C57BL_6J_9.CNhs13219.11816-124E7.mm9.nobarcode.sga CD4+CD25-CD44- naive conventional T cells|PMA and ionomycin stimulation|02hr|pool1 (C57BL_6J) CAGE -
243 CD4_bCD25-CD44-NaiveConventionalTCells_cPMAAndIonomycinStimulation_c02hr_cPool2_0_8Balb_cAJcl_9.CNhs13226.11820-124F2.mm9.nobarcode.sga CD4+CD25-CD44- naive conventional T cells|PMA and ionomycin stimulation|02hr|pool2 (Balb_cAJcl) CAGE -
244 CD4_bCD25-CD44-NaiveConventionalTCells_cPool1_0_8C57BL_6J_9.CNhs13217.11813-124E4.mm9.nobarcode.sga CD4+CD25-CD44- naive conventional T cells|pool1 (C57BL_6J) CAGE -
245 CD4_bCD25-CD44-NaiveConventionalTCells_cPool2_0_8Balb_cAJcl_9.CNhs13220.11817-124E8.mm9.nobarcode.sga CD4+CD25-CD44- naive conventional T cells|pool2 (Balb_cAJcl) CAGE -
246 CD41_bMegakaryocyteCancer_cDonor1.CNhs13079.11774-124A1.mm9.nobarcode.sga CD41+ megakaryocyte cancer|donor1 CAGE -
247 CD41_bMegakaryocyteCancer_cDonor2.CNhs13213.11776-124A3.mm9.nobarcode.sga CD41+ megakaryocyte cancer|donor2 CAGE -
248 CD41_bMegakaryocyteCancer_cDonor3.CNhs13506.11778-124A5.mm9.nobarcode.sga CD41+ megakaryocyte cancer|donor3 CAGE -
249 CD41_bMegakaryocyteControl_cDonor1.CNhs13212.11775-124A2.mm9.nobarcode.sga CD41+ megakaryocyte control|donor1 CAGE -
250 CD41_bMegakaryocyteControl_cDonor2.CNhs13214.11777-124A4.mm9.nobarcode.sga CD41+ megakaryocyte control|donor2 CAGE -
251 CD41_bMegakaryocyteControl_cDonor3.CNhs13201.11779-124A6.mm9.nobarcode.sga CD41+ megakaryocyte control|donor3 CAGE -
252 MouseAorticSmoothMuscleCells-Differentiated_cBiol_rep1.CNhs11055.11484-119D8.mm9.nobarcode.sga Mouse Aortic Smooth Muscle cells - differentiated|biol_rep1 CAGE -
253 MouseAorticSmoothMuscleCells-Differentiated_cBiol_rep2.CNhs11056.11485-119D9.mm9.nobarcode.sga Mouse Aortic Smooth Muscle cells - differentiated|biol_rep2 CAGE -
254 MouseAorticSmoothMuscleCells_cDonor1.CNhs11297.11299-117B3.mm9.nobarcode.sga Mouse Aortic Smooth Muscle cells|donor1 CAGE -
255 MouseAstrocytes-Cerebellar_cDonor1.CNhs13077.11708-123B7.mm9.nobarcode.sga Mouse Astrocytes - cerebellar|donor1 CAGE -
256 MouseAstrocytes-Cerebellar_cDonor2.CNhs12076.11550-120C2.mm9.nobarcode.sga Mouse Astrocytes - cerebellar|donor2 CAGE -
257 MouseAstrocytes-Hippocampus_cDonor1.CNhs12129.11709-123B8.mm9.nobarcode.sga Mouse Astrocytes - hippocampus|donor1 CAGE -
258 MouseAstrocytes-Hippocampus_cDonor2.CNhs12077.11551-120C3.mm9.nobarcode.sga Mouse Astrocytes - hippocampus|donor2 CAGE -
259 MouseAstrocytes-Hippocampus_cDonor3.CNhs12106.11632-122C3.mm9.nobarcode.sga Mouse Astrocytes - hippocampus|donor3 CAGE -
260 MouseAstrocytes_cDonor2.CNhs12078.11552-120C4.mm9.nobarcode.sga Mouse Astrocytes|donor2 CAGE -
261 MouseAstrocytes_cDonor3.CNhs12107.11633-122C4.mm9.nobarcode.sga Mouse Astrocytes|donor3 CAGE -
262 MouseCD19_bBCells_cDonor1.CNhs13531.11856-125A2.mm9.nobarcode.sga Mouse CD19+ B Cells|donor1 CAGE -
263 MouseCD4_bTCells_cDonor1.CNhs13509.11854-124I9.mm9.nobarcode.sga Mouse CD4+ T Cells|donor1 CAGE -
264 MouseCD8_bTCells_cDonor1.CNhs13511.11855-125A1.mm9.nobarcode.sga Mouse CD8+ T Cells|donor1 CAGE -
265 MouseCardiacMyocytes_cDonor1.CNhs12355.11711-123C1.mm9.nobarcode.sga Mouse Cardiac Myocytes|donor1 CAGE -
266 MouseCardiacMyocytes_cDonor2.CNhs12356.11729-123E1.mm9.nobarcode.sga Mouse Cardiac Myocytes|donor2 CAGE -
267 MouseCardiacMyocytes_cDonor3.CNhs12353.11634-122C5.mm9.nobarcode.sga Mouse Cardiac Myocytes|donor3 CAGE -
268 MouseEmbryonicFibroblasts_cDonor1.CNhs12130.11712-123C2.mm9.nobarcode.sga Mouse Embryonic fibroblasts|donor1 CAGE -
269 MouseGranuleCells_cDonor1.CNhs12131.11713-123C3.mm9.nobarcode.sga Mouse Granule cells|donor1 CAGE -
270 MouseGranuleCells_cDonor2.CNhs12357.11731-123E3.mm9.nobarcode.sga Mouse Granule cells|donor2 CAGE -
271 MouseGranuleCells_cDonor3.CNhs12108.11636-122C7.mm9.nobarcode.sga Mouse Granule cells|donor3 CAGE -
272 MouseHepaticSinusoidalEndothelialCells_cDonor1.CNhs13209.11830-124G3.mm9.nobarcode.sga Mouse hepatic Sinusoidal Endothelial Cells|donor1 CAGE -
273 MouseHepaticStellateCells_0_8lipocyte_9_cDonor1.CNhs13196.11825-124F7.mm9.nobarcode.sga Mouse hepatic Stellate Cells (lipocyte)|donor1 CAGE -
274 MouseHepatocyte_cDonor1.CNhs13078.11714-123C4.mm9.nobarcode.sga Mouse hepatocyte|donor1 CAGE -
275 MouseHepatocyte_cDonor3.CNhs12615.11637-122C8.mm9.nobarcode.sga Mouse hepatocyte|donor3 CAGE -
276 MouseHepatocyte_cDonor6.CNhs13090.11822-124F4.mm9.nobarcode.sga Mouse hepatocyte|donor6 CAGE -
277 MouseHepatocyte_cDonor8.CNhs13091.11824-124F6.mm9.nobarcode.sga Mouse hepatocyte|donor8 CAGE -
278 MouseMeningealCells_cDonor1.CNhs12132.11716-123C6.mm9.nobarcode.sga Mouse Meningeal cells|donor1 CAGE -
279 MouseMeningealCells_cDonor3.CNhs12109.11639-122D1.mm9.nobarcode.sga Mouse Meningeal cells|donor3 CAGE -
280 MouseMesenchymalStemCells-BoneMarrowDerived_cDonor1.CNhs12628.11717-123C7.mm9.nobarcode.sga Mouse Mesenchymal stem cells - bone marrow derived|donor1 CAGE -
281 MouseMesenchymalStemCells-BoneMarrowDerived_cDonor2.CNhs12633.11735-123E7.mm9.nobarcode.sga Mouse Mesenchymal stem cells - bone marrow derived|donor2 CAGE -
282 MouseMesenchymalStemCells-BoneMarrowDerived_cDonor3.CNhs12616.11640-122D2.mm9.nobarcode.sga Mouse Mesenchymal stem cells - bone marrow derived|donor3 CAGE -
283 MouseMicroglia_cDonor1.CNhs12629.11718-123C8.mm9.nobarcode.sga Mouse Microglia|donor1 CAGE -
284 MouseMicroglia_cDonor2.CNhs12634.11736-123E8.mm9.nobarcode.sga Mouse Microglia|donor2 CAGE -
285 MouseMicroglia_cDonor3.CNhs12617.11641-122D3.mm9.nobarcode.sga Mouse Microglia|donor3 CAGE -
286 MouseNeurons-Cortical_cDonor1.CNhs12025.11724-123D5.mm9.nobarcode.sga Mouse Neurons - cortical|donor1 CAGE -
287 MouseNeurons-Cortical_cDonor2.CNhs11947.11742-123F5.mm9.nobarcode.sga Mouse Neurons - cortical|donor2 CAGE -
288 MouseNeurons-Cortical_cDonor3.CNhs12112.11647-122D9.mm9.nobarcode.sga Mouse Neurons - cortical|donor3 CAGE -
289 MouseNeurons-DorsalSpinalCord_cDonor1.CNhs12630.11720-123D1.mm9.nobarcode.sga Mouse Neurons - dorsal spinal cord|donor1 CAGE -
290 MouseNeurons-DorsalSpinalCord_cDonor2.CNhs12635.11738-123F1.mm9.nobarcode.sga Mouse Neurons - dorsal spinal cord|donor2 CAGE -
291 MouseNeurons-DorsalSpinalCord_cDonor3.CNhs12618.11643-122D5.mm9.nobarcode.sga Mouse Neurons - dorsal spinal cord|donor3 CAGE -
292 MouseNeurons-Hippocampal_cDonor1.CNhs12133.11721-123D2.mm9.nobarcode.sga Mouse Neurons - hippocampal|donor1 CAGE -
293 MouseNeurons-Hippocampal_cDonor2.CNhs12359.11739-123F2.mm9.nobarcode.sga Mouse Neurons - hippocampal|donor2 CAGE -
294 MouseNeurons-Hippocampal_cDonor3.CNhs12110.11644-122D6.mm9.nobarcode.sga Mouse Neurons - hippocampal|donor3 CAGE -
295 MouseNeurons-Raphe_cDonor1.CNhs12631.11722-123D3.mm9.nobarcode.sga Mouse Neurons - raphe|donor1 CAGE -
296 MouseNeurons-Raphe_cDonor2.CNhs12636.11740-123F3.mm9.nobarcode.sga Mouse Neurons - raphe|donor2 CAGE -
297 MouseNeurons-Raphe_cDonor3.CNhs12619.11645-122D7.mm9.nobarcode.sga Mouse Neurons - raphe|donor3 CAGE -
298 MouseNeurons-Striatal_cDonor1.CNhs12134.11723-123D4.mm9.nobarcode.sga Mouse Neurons - striatal|donor1 CAGE -
299 MouseNeurons-Striatal_cDonor2.CNhs12360.11741-123F4.mm9.nobarcode.sga Mouse Neurons - striatal|donor2 CAGE -
300 MouseNeurons-Striatal_cDonor3.CNhs12111.11646-122D8.mm9.nobarcode.sga Mouse Neurons - striatal|donor3 CAGE -
301 MouseNeurons-SubstantiaNigra_cDonor4_cTech_rep1.CNhs12612.11489-119E4.mm9.nobarcode.sga Mouse Neurons - substantia nigra|donor4|tech_rep1 CAGE -
302 MouseNeurons-SubstantiaNigra_cDonor5.CNhs12614.11490-119E5.mm9.nobarcode.sga Mouse Neurons - substantia nigra|donor5 CAGE -
303 MouseNeurons-SubstantiaNigra_cDonor6.CNhs12643.11770-123I6.mm9.nobarcode.sga Mouse Neurons - substantia nigra|donor6 CAGE -
304 MouseNeurons-VentralSpinalCord_cDonor1.CNhs12632.11725-123D6.mm9.nobarcode.sga Mouse Neurons - ventral spinal cord|donor1 CAGE -
305 MouseNeurons-VentralSpinalCord_cDonor2.CNhs12638.11743-123F6.mm9.nobarcode.sga Mouse Neurons - ventral spinal cord|donor2 CAGE -
306 MouseNeurons-VentralSpinalCord_cDonor3.CNhs12113.11648-122E1.mm9.nobarcode.sga Mouse Neurons - ventral spinal cord|donor3 CAGE -
307 MouseSchwann_cDonor1.CNhs12507.11728-123D9.mm9.nobarcode.sga Mouse Schwann|donor1 CAGE -
308 MouseSchwann_cDonor2.CNhs12573.11746-123F9.mm9.nobarcode.sga Mouse Schwann|donor2 CAGE -
309 MouseSchwann_cDonor3.CNhs12115.11651-122E4.mm9.nobarcode.sga Mouse Schwann|donor3 CAGE -
310 granulocyteMacrophageProgenitorGMP_cBiol_rep3.CNhs11928.12129-128D5.mm9.nobarcode.sga granulocyte macrophage progenitor GMP|biol_rep3 CAGE -
311 neurospheres-EntericNeuronDerived_cBiol_rep1.CNhs13087.11810-124E1.mm9.nobarcode.sga neurospheres - enteric neuron derived|biol_rep1 CAGE -
312 neurospheres-EntericNeuronDerived_cBiol_rep2.CNhs13088.11811-124E2.mm9.nobarcode.sga neurospheres - enteric neuron derived|biol_rep2 CAGE -
313 neurospheres-EntericNeuronDerived_cBiol_rep3.CNhs13089.11812-124E3.mm9.nobarcode.sga neurospheres - enteric neuron derived|biol_rep3 CAGE -
314 neurospheres-ParasympatheticNeuronDerived_cBiol_rep1.CNhs13084.11807-124D7.mm9.nobarcode.sga neurospheres - parasympathetic neuron derived|biol_rep1 CAGE -
315 neurospheres-ParasympatheticNeuronDerived_cBiol_rep2.CNhs13085.11808-124D8.mm9.nobarcode.sga neurospheres - parasympathetic neuron derived|biol_rep2 CAGE -
316 neurospheres-ParasympatheticNeuronDerived_cBiol_rep3.CNhs13086.11809-124D9.mm9.nobarcode.sga neurospheres - parasympathetic neuron derived|biol_rep3 CAGE -
317 neurospheres-SympatheticNeuronDerived_cBiol_rep1.CNhs13081.11804-124D4.mm9.nobarcode.sga neurospheres - sympathetic neuron derived|biol_rep1 CAGE -
318 neurospheres-SympatheticNeuronDerived_cBiol_rep2.CNhs13082.11805-124D5.mm9.nobarcode.sga neurospheres - sympathetic neuron derived|biol_rep2 CAGE -
319 neurospheres-SympatheticNeuronDerived_cBiol_rep3.CNhs13083.11806-124D6.mm9.nobarcode.sga neurospheres - sympathetic neuron derived|biol_rep3 CAGE -
320 EBFKOHPCsInducedToTCell_c00hr00min_cBiol_rep1.CNhs11058.12972-138H2.mm9.nobarcode.sga EBF KO HPCs induced to T cell|00hr00min|biol_rep1 CAGE -
321 EBFKOHPCsInducedToTCell_c00hr00min_cBiol_rep2.CNhs12980.12988-138I9.mm9.nobarcode.sga EBF KO HPCs induced to T cell|00hr00min|biol_rep2 CAGE -
322 EBFKOHPCsInducedToTCell_c00hr00min_cBiol_rep3.CNhs13687.13004-139B7.mm9.nobarcode.sga EBF KO HPCs induced to T cell|00hr00min|biol_rep3 CAGE -
323 J2EErythroblasticLeukemiaResponseToErythropoietin_c00hr00min_cBiol_rep2.CNhs12668.13129-140G6.mm9.nobarcode.sga J2E erythroblastic leukemia response to erythropoietin|00hr00min|biol_rep2 CAGE -
324 J2EErythroblasticLeukemiaResponseToErythropoietin_c00hr00min_cBiol_rep3_cTech_rep1.CNhs12770.13195-141E9.mm9.nobarcode.sga J2E erythroblastic leukemia response to erythropoietin|00hr00min|biol_rep3|tech_rep1 CAGE -
325 ST2_0_8MesenchymalStemCells_9Cells_cMediumChange_0_8withoutInduction_9_c00hr_cBiol_rep1_0_8000hC4_9.CNhs11939.12338-130I7.mm9.nobarcode.sga ST2 (Mesenchymal stem cells) cells|medium change (without induction)|00hr|biol_rep1 (000hC4) CAGE -
326 ST2_0_8MesenchymalStemCells_9Cells_cMediumChange_0_8withoutInduction_9_c00hr_cBiol_rep2_0_8000hC5_9.CNhs13275.12460-132E3.mm9.nobarcode.sga ST2 (Mesenchymal stem cells) cells|medium change (without induction)|00hr|biol_rep2 (000hC5) CAGE -
327 ST2_0_8MesenchymalStemCells_9Cells_cMediumChange_0_8withoutInduction_9_c00hr_cBiol_rep3_0_8000hC6_9.CNhs13324.12582-133I8.mm9.nobarcode.sga ST2 (Mesenchymal stem cells) cells|medium change (without induction)|00hr|biol_rep3 (000hC6) CAGE -
328 TSt-4_fDLL1FeederCells_cBiol_rep1.CNhs13407.12971-138H1.mm9.nobarcode.sga TSt-4/DLL1 feeder cells|biol_rep1 CAGE -
329 TSt-4_fDLL1FeederCells_cBiol_rep2.CNhs13408.12987-138I8.mm9.nobarcode.sga TSt-4/DLL1 feeder cells|biol_rep2 CAGE -
330 TSt-4_fDLL1FeederCells_cBiol_rep3.CNhs13409.13003-139B6.mm9.nobarcode.sga TSt-4/DLL1 feeder cells|biol_rep3 CAGE -
331 TrachealEpithelialCells_cDifferentiationToCiliatedEpithelialCells_c000hr_cBiol_rep1.CNhs13739.13367-143G1.mm9.nobarcode.sga Tracheal epithelial cells|differentiation to ciliated epithelial cells|000hr|biol_rep1 CAGE -
332 TrachealEpithelialCells_cDifferentiationToCiliatedEpithelialCells_c000hr_cBiol_rep2.CNhs13740.13368-143G2.mm9.nobarcode.sga Tracheal epithelial cells|differentiation to ciliated epithelial cells|000hr|biol_rep2 CAGE -
333 TrachealEpithelialCells_cDifferentiationToCiliatedEpithelialCells_c000hr_cBiol_rep3.CNhs13741.13369-143G3.mm9.nobarcode.sga Tracheal epithelial cells|differentiation to ciliated epithelial cells|000hr|biol_rep3 CAGE -
334 macrophage_cBoneMarrowDerived_cPool1.CNhs11457.3560-170A1.mm9.nobarcode.sga macrophage|bone marrow derived|pool1 CAGE -
335 macrophage_cBoneMarrowDerived_cPool2.CNhs11532.3632-171A1.mm9.nobarcode.sga macrophage|bone marrow derived|pool2 CAGE -
336 trophoblastStemCellLineB1Differentiation_cDay00_cBiol_rep1.CNhs13526.13297-142H3.mm9.nobarcode.sga trophoblast stem cell line B1 differentiation|day00|biol_rep1 CAGE -
337 trophoblastStemCellLineR1ABDifferentiation_cDay00_cBiol_rep1.CNhs13481.13283-142F7.mm9.nobarcode.sga trophoblast stem cell line R1AB differentiation|day00|biol_rep1 CAGE -
338 trophoblastStemCellLineRybpDifferentiation_cDay00_cBiol_rep1.CNhs13519.13290-142G5.mm9.nobarcode.sga trophoblast stem cell line Rybp differentiation|day00|biol_rep1 CAGE -
339 mouseFibroblastCellLine%3aCRL-1658NIH_f3T3.CNhs11093.1830-49C7.mm9.nobarcode.sga J2E erythroblastic leukemia response to erythropoietin|00hr00min|biol_rep1 CAGE -
340 allSamples.sga All samples combined CAGE -
341 allAdultTissues.sga All adult samples CAGE -

All Samples Combined: all samples have been concatenated, sorted and compacted (using compactsga). The fifth field of the resulting SGA file has been divided by 10 and rounded to the lower integer. Only lines with Fifth field grater that 5 has been kept.
All adult tissues: similar to All samples but restricted to adult tissues only

Technical Notes

BAM files were converted to BED using bamToBed v2.12.0 (bedtools). SGA conversion was carried out using bed2sga.pl (ChIP-Seq v. 1.5.3).

References

Last update: 13 Oct 2017