SwissRegulon, database of genome-wide annotations of regulatory sites.

Description

SwissRegulon annotation of Transcription Start Sites and Transcription Start Clusters generated with FANTOM4 CAGE data.

Source

Samples

From M. musculus (July 2007 NCBI37/mm9).

Genome Annotation:

Filename Description Feature GEO-ID
1 mouse_TSS_v1.sga Transcription Start Sites TSS -
2 mouse_TSC_v1.sga Transcription Start Clusters TSC -
3 mouse_TSR_v1.sga Transcription Start Regions TSR -

Technical Notes

GFF files were converted in SGA. TSS were mapped to the 'Representative position' of the transcription start region.

References

Last update: 13 Oct 2017