Francescatto 2017, Transcription profiling of brain tissues.

Expression profile of 15 distinct anatomical regions of the aged macaque central nervous system using Cap Analysis of Gene Expression. This serie is part of FANTOM5 consortium.

• Raw data was downloaded from: FANTOM5
• Input file format: BAM
• Download date: 11-7-2018

From M. mulatta (Nov 2015 BCM Mmul_8.0.1/rheMac8).

Transcription Profiling data:

	Filename	Description	Feature	GEO-ID
1	amygdala_cAdult_cDonor8633.CNhs14182.14610-159A2.rheMac8.nobarcode.sga	Amygdala	CAGE	-
2	caudateNucleus_cAdult_cDonor8633.CNhs14174.10390-105I3.rheMac8.nobarcode.sga	Caudate nucleus	CAGE	-
3	cerebellum_cAdult_cDonor8633.CNhs14176.10392-105I5.rheMac8.nobarcode.sga	Cerebellum	CAGE	-
4	globusPallidus_cAdult_cDonor8633.CNhs14171.10387-105H9.rheMac8.nobarcode.sga	Globus pallidus	CAGE	-
5	hippocampus_cAdult_cDonor8633.CNhs14180.10396-105I9.rheMac8.nobarcode.sga	Hippocampus	CAGE	-
6	locusCoeruleus_cAdult_cDonor8633.CNhs14172.10388-105I1.rheMac8.nobarcode.sga	Locus coeruleus	CAGE	-
7	medialFrontalGyrus_cAdult_cDonor8633.CNhs14177.10393-105I6.rheMac8.nobarcode.sga	Medial frontal gyrus	CAGE	-
8	medialTemporalGyrus_cAdult_cDonor8633.CNhs14179.10395-105I8.rheMac8.nobarcode.sga	Medial temporal gyrus	CAGE	-
9	medullaOblongata_cAdult_cDonor8633.CNhs14175.10391-105I4.rheMac8.nobarcode.sga	Medulla oblongata	CAGE	-
10	occipitalCortex_cAdult_cDonor8633.CNhs14169.10385-105H7.rheMac8.nobarcode.sga	Occipital cortex	CAGE	-
11	parietalGyrus_cAdult_cDonor8633.CNhs14181.14609-159A1.rheMac8.nobarcode.sga	Parietal gyrus	CAGE	-
12	putamen_cAdult_cDonor8633.CNhs14178.10394-105I7.rheMac8.nobarcode.sga	Putamen	CAGE	-
13	spinalCord_cAdult_cDonor8633.CNhs14168.10384-105H6.rheMac8.nobarcode.sga	Spinal cord	CAGE	-
14	substantiaNigra_cAdult_cDonor8633.CNhs14173.10389-105I2.rheMac8.nobarcode.sga	Substantia nigra	CAGE	-
15	thalamus_cAdult_cDonor8633.CNhs14170.10386-105H8.rheMac8.nobarcode.sga	Thalamus	CAGE	-

BAM files were converted to BED using bamToBed v2.12.0 (bedtools). abd to SGA using bed2sga.pl (ChIP-Seq v. 1.5.3).

• Francescatto M, Lizio M, Philippens I, Bontrop R, Sakai M, Watanabe S, Itoh M, Hasegawa A, Lassmann T, Severin J, Harshbarger J, Abugessaisa I, Kasukawa T, Carninci P, Hayashizaki Y, Forrest ARR, Kawaji H, Rizzu P, Heutink P
  Transcription start site profiling of 15 anatomical regions of the Macaca mulatta central nervous system. Sci Data. 2017 Oct 31;4:170163. doi: 10.1038/sdata.2017.163. 29087374