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PWMTools

PWMScan - Genome-wide position weight matrix (PWM) scanner

Target Databases or Sequence Sets
Genome Assemblies

Intersect TFBS Predictions with Genomic Regions
      Upload custom list (in BED format)
         from a FILE:    
        
         or from a URL:
Upload Sequence Set in Fasta Format
      from a FILE
     
      or from a URL:
     

If you don't find your favorite genome assembly, please contact us, and we will try to make it available.

Weight Matrix
PWMs from miscellaneous Libraries     
        Motif Library:  
        Motif :  
PWMs from CIS-BP Libraries     
        Motif Library:  
        Motif :  
Custom Weight Matrix
          Matrix Format
                     

  Paste Matrix
                     
                     

  Or Upload (text File containing the matrix)
                      from a FILE :
                     
                     

                      or from a URL:
                     

Consensus sequence
                     
Scanning Options
        Search Strand
        Reference Position
  Non-overlapping matches

         

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Background


Last update March 2018