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PWMScore - Score a genomic sequence set in FASTA format with a PWM Model

Input Data Sets
Upload Sequence Set in Fasta Format
      from a FILE
     
      or from a URL:
     

Weight Matrix
PWMs from miscellaneous Libraries     
        Motif Library:  
        Motif :  
PWMs from CIS-BP Libraries     
        Motif Library:  
        Motif :  
Custom Weight Matrix
          Matrix Format
                     

Paste Matrix
                     
                     

Or Upload (text File containing the matrix)
                      from a FILE :
                     
                      or from a URL:
                     

Options for Binding Prediction Method
Sum occupancy score
  Best match scoring
Pseudo-weight
  Background composition normalization
Uniform bg   Seq Library bg   Sequence-based bg
  Search Strand

     

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Background




Last update April 2021