SSA

SSA

Signal Search Analysis Server

SSA is a software package for the analysis of nucleic acid sequence motifs that are postionally correlated with a functional site such as a transcription initiation site for instance. The programs offered by this web server are listed below.


Access SSA tools
Cpr Generation of a Constraint Profile
SList Generation of a Signal List
OProf Generation of a Signal Occurrence Profile
PatOp Pattern Optimization
FindM Find Motifs around Functional Sites
FromFPS Extract Sequences around Functional Sites

SSA documentation
SSA user manual
SSA tutorial
References
PMID:3808945
Compilation and analysis of eukaryotic POL II promoter sequences.
Bucher P, Trifonov EN
Nucleic Acids Res. 1986 Dec 22;14(24):10009-26.
Last update 9 Jul. 2010