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ChIP-Seq
Computational Cancer Genomics | ExPASy | EPFL | Home Page
Due to maintenance activity, ChIP-Seq might not be fully operational these days. Please contact us in case of problems.

ChIP-Extract Analysis Module

Feature Correlation Tool v1.5.3

ChIP-Seq Input Data (Reference Feature)
Select available Data Sets
      Genome :   
      Data Type :   
      Series   :
      Sample :   
      LiftOver :   

Server-resident SGA Files by Filename

Upload custom Data
     
      from a FILE (gzip or zip formats are also accepted):
     
      or from a URL:
     
      Sort Input :        off     on       (For SGA only)
      Experiment :
      Feature  :      
 Genomes

Additional Input Data Options
      Strand :    +    -    any    oriented
      Centering :      
 Repeat Masker      
Analysis Parameters
      Range
      Beginning :       End :
Histogram Parameters
      Window Width :
      Count Cut-off :
ChIP-Seq Input Data (Target Feature)
Select available Data Sets
      Genome :   
      Data Type :   
      Series :   
      Sample :   

Server-resident SGA Files by Filename

Upload custom Data
     
      from a FILE (gzip or zip formats are also accepted):
     
      or from a URL:
     
      Sort Input :        off     on       (For SGA only)
      Experiment :
      Feature  :      
 Genomes

Additional Input Data Options
      Strand :    +    -    any
      Centering :      
 Repeat Masker      
Heatmap Options
     Heatmap with ordering

    Resemblance to overal pattern
    Center of gravity from left to right
    K-means clustering

   
plus
Background

Last update October 2017